Difference between revisions of "RXN0-1132"

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(Created page with "Category:reaction == Reaction 3.2.1.52-RXN == * direction: ** left-to-right * common-name: ** hexosaminidase * ec-number: ** [http://enzyme.expasy.org/EC/3.2.1.52 ec-3.2.1...")
(Created page with "Category:reaction == Reaction RXN0-5398 == * direction: ** reversible * common-name: ** pseudouridine-5'-phosphate glycosidase * ec-number: ** [http://enzyme.expasy.org/EC...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.1.52-RXN ==
+
== Reaction RXN0-5398 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** hexosaminidase
+
** pseudouridine-5'-phosphate glycosidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.52 ec-3.2.1.52]
+
** [http://enzyme.expasy.org/EC/4.2.1.70 ec-4.2.1.70]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[N-Acetyl-beta-D-Hexosaminides]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[N-acetyl-beta-D-hexosamines]][c]
+
* 1 [[CPD-15317]][c] '''+''' 1 [[URACIL]][c] '''<=>''' 1 [[PSEUDOURIDINE-5-P]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ15657]]
+
* Gene: [[SJ04700]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13212]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6019]], pseudouridine degradation:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18340 18340]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P13723 P13723]
+
** [http://www.uniprot.org/uniprot/Q9JWF1 Q9JWF1]
−
** [http://www.uniprot.org/uniprot/P07686 P07686]
+
** [http://www.uniprot.org/uniprot/Q9JTX5 Q9JTX5]
−
** [http://www.uniprot.org/uniprot/Q04786 Q04786]
+
** [http://www.uniprot.org/uniprot/Q9PPJ9 Q9PPJ9]
−
** [http://www.uniprot.org/uniprot/P06865 P06865]
+
** [http://www.uniprot.org/uniprot/Q9CGH0 Q9CGH0]
−
** [http://www.uniprot.org/uniprot/P20060 P20060]
+
** [http://www.uniprot.org/uniprot/Q9CI80 Q9CI80]
−
** [http://www.uniprot.org/uniprot/Q9CFI2 Q9CFI2]
+
** [http://www.uniprot.org/uniprot/Q9JX44 Q9JX44]
−
** [http://www.uniprot.org/uniprot/Q9JVT3 Q9JVT3]
+
** [http://www.uniprot.org/uniprot/Q9V1A5 Q9V1A5]
−
** [http://www.uniprot.org/uniprot/P29416 P29416]
+
** [http://www.uniprot.org/uniprot/Q9PP96 Q9PP96]
−
** [http://www.uniprot.org/uniprot/Q54468 Q54468]
+
** [http://www.uniprot.org/uniprot/Q9PN18 Q9PN18]
−
** [http://www.uniprot.org/uniprot/P39848 P39848]
+
** [http://www.uniprot.org/uniprot/Q9PJ89 Q9PJ89]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q9PNJ2 Q9PNJ2]
−
{{#set: common-name=hexosaminidase}}
+
** [http://www.uniprot.org/uniprot/Q9PLW9 Q9PLW9]
−
{{#set: ec-number=ec-3.2.1.52}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=2}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01055 R01055]
−
{{#set: nb pathway associated=0}}
+
{{#set: direction=reversible}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common-name=pseudouridine-5'-phosphate glycosidase}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: ec-number=ec-4.2.1.70}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:01, 14 January 2021

Reaction RXN0-5398

  • direction:
    • reversible
  • common-name:
    • pseudouridine-5'-phosphate glycosidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6019, pseudouridine degradation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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