Difference between revisions of "RXN0-1132"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN0-5398 == * direction: ** reversible * common-name: ** pseudouridine-5'-phosphate glycosidase * ec-number: ** [http://enzyme.expasy.org/EC...")
(Created page with "Category:reaction == Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN == * direction: ** left-to-right * common-name: ** fatty acid synthase * ec-number: ** [http://enzyme.expasy.org...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-5398 ==
+
== Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** pseudouridine-5'-phosphate glycosidase
+
** fatty acid synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.70 ec-4.2.1.70]
+
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-15317]][c] '''+''' 1 [[URACIL]][c] '''<=>''' 1 [[PSEUDOURIDINE-5-P]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ACETYL-ACP]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04700]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ18059]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19629]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00613]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06617]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00320]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04769]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11672]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00005]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10624]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15984]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15983]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03883]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06944]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13014]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04443]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6019]], pseudouridine degradation:
+
* [[PWY-5966]]:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-5965]]:
 +
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli):
 +
** '''5''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18340 18340]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JWF1 Q9JWF1]
+
** [http://www.uniprot.org/uniprot/P23902 P23902]
−
** [http://www.uniprot.org/uniprot/Q9JTX5 Q9JTX5]
+
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
−
** [http://www.uniprot.org/uniprot/Q9PPJ9 Q9PPJ9]
+
** [http://www.uniprot.org/uniprot/P49327 P49327]
−
** [http://www.uniprot.org/uniprot/Q9CGH0 Q9CGH0]
+
** [http://www.uniprot.org/uniprot/P43710 P43710]
−
** [http://www.uniprot.org/uniprot/Q9CI80 Q9CI80]
+
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
−
** [http://www.uniprot.org/uniprot/Q9JX44 Q9JX44]
+
** [http://www.uniprot.org/uniprot/O67612 O67612]
−
** [http://www.uniprot.org/uniprot/Q9V1A5 Q9V1A5]
+
** [http://www.uniprot.org/uniprot/P20582 P20582]
−
** [http://www.uniprot.org/uniprot/Q9PP96 Q9PP96]
+
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
−
** [http://www.uniprot.org/uniprot/Q9PN18 Q9PN18]
+
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
−
** [http://www.uniprot.org/uniprot/Q9PJ89 Q9PJ89]
+
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
−
** [http://www.uniprot.org/uniprot/Q9PNJ2 Q9PNJ2]
+
** [http://www.uniprot.org/uniprot/P43711 P43711]
−
** [http://www.uniprot.org/uniprot/Q9PLW9 Q9PLW9]
+
** [http://www.uniprot.org/uniprot/O25284 O25284]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
−
** [http://www.genome.jp/dbget-bin/www_bget?R01055 R01055]
+
** [http://www.uniprot.org/uniprot/O34340 O34340]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
−
{{#set: common-name=pseudouridine-5'-phosphate glycosidase}}
+
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
−
{{#set: ec-number=ec-4.2.1.70}}
+
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/P41175 P41175]
 +
** [http://www.uniprot.org/uniprot/P31176 P31176]
 +
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 +
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
 +
** [http://www.uniprot.org/uniprot/P73283 P73283]
 +
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 +
** [http://www.uniprot.org/uniprot/O64485 O64485]
 +
** [http://www.uniprot.org/uniprot/O65677 O65677]
 +
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
 +
** [http://www.uniprot.org/uniprot/O23738 O23738]
 +
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 +
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 +
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 +
** [http://www.uniprot.org/uniprot/O54440 O54440]
 +
** [http://www.uniprot.org/uniprot/P55338 P55338]
 +
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 +
** [http://www.uniprot.org/uniprot/P12276 P12276]
 +
** [http://www.uniprot.org/uniprot/P12785 P12785]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=fatty acid synthase}}
 +
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179|ec-2.3.1.85|ec-2.3.1.86}}
 +
{{#set: nb gene associated=17}}
 +
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:21, 15 January 2021

Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5966:
    • 2 reactions found over n.a reactions in the full pathway
  • PWY-5965:
    • 1 reactions found over n.a reactions in the full pathway
  • FASYN-INITIAL-PWY, superpathway of fatty acid biosynthesis initiation (E. coli):
    • 5 reactions found over 2 reactions in the full pathway
  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN0-1132&oldid=114674"