Difference between revisions of "RXN0-1603"

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(Created page with "Category:reaction == Reaction PYRUVATE-CARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** pyruvate carboxylase * ec-number: ** [http://enzyme.expasy.org/EC...")
(Created page with "Category:reaction == Reaction RIB5PISOM-RXN == * direction: ** reversible * common-name: ** ribose-5-phosphate isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRUVATE-CARBOXYLASE-RXN ==
+
== Reaction RIB5PISOM-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** pyruvate carboxylase
+
** ribose-5-phosphate isomerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.4.1.1 ec-6.4.1.1]
+
** [http://enzyme.expasy.org/EC/5.3.1.6 ec-5.3.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12670]]
+
* Gene: [[SJ00411]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00485]]
+
* Gene: [[SJ07743]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5750]], itaconate biosynthesis I:
+
* [[P124-PWY]], Bifidobacterium shunt:
−
** '''3''' reactions found over '''2''' reactions in the full pathway
+
** '''12''' reactions found over '''15''' reactions in the full pathway
−
* [[P42-PWY]], incomplete reductive TCA cycle:
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY66-399]], gluconeogenesis III:
 
 
** '''11''' reactions found over '''12''' reactions in the full pathway
 
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism:
+
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
−
** '''9''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
+
* [[PWY-5723]], Rubisco shunt:
−
** '''10''' reactions found over '''13''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20845 20845]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14660 14660]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00344 R00344]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q05920 Q05920]
+
** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
−
** [http://www.uniprot.org/uniprot/Q9PNQ4 Q9PNQ4]
+
** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
−
** [http://www.uniprot.org/uniprot/P95127 P95127]
+
** [http://www.uniprot.org/uniprot/P44725 P44725]
−
** [http://www.uniprot.org/uniprot/Q9PP00 Q9PP00]
+
** [http://www.uniprot.org/uniprot/Q58998 Q58998]
−
** [http://www.uniprot.org/uniprot/Q9CHQ7 Q9CHQ7]
+
** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
−
** [http://www.uniprot.org/uniprot/Q9KWU4 Q9KWU4]
+
** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
−
** [http://www.uniprot.org/uniprot/P11498 P11498]
+
** [http://www.uniprot.org/uniprot/P37351 P37351]
−
** [http://www.uniprot.org/uniprot/P52873 P52873]
+
** [http://www.uniprot.org/uniprot/P74234 P74234]
−
** [http://www.uniprot.org/uniprot/P11154 P11154]
+
** [http://www.uniprot.org/uniprot/Q55766 Q55766]
−
** [http://www.uniprot.org/uniprot/P32327 P32327]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/O17732 O17732]
+
{{#set: common-name=ribose-5-phosphate isomerase}}
−
** [http://www.uniprot.org/uniprot/Q9UUE1 Q9UUE1]
+
{{#set: ec-number=ec-5.3.1.6}}
−
** [http://www.uniprot.org/uniprot/Q16921 Q16921]
 
−
** [http://www.uniprot.org/uniprot/Q9XBJ1 Q9XBJ1]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=pyruvate carboxylase}}
 
−
{{#set: ec-number=ec-6.4.1.1}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=6}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:05, 5 January 2021

Reaction RIB5PISOM-RXN

  • direction:
    • reversible
  • common-name:
    • ribose-5-phosphate isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P124-PWY, Bifidobacterium shunt:
    • 12 reactions found over 15 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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