Difference between revisions of "RXN0-2023"
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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY1A0-6325 PWY1A0-6325] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-20117...") |
(Created page with "Category:reaction == Reaction RXN0-2023 == * direction: ** left-to-right * common-name: ** trna-specific 2-thiouridylase * ec-number: ** [http://enzyme.expasy.org/EC/2.8.1...") |
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| − | [[Category: | + | [[Category:reaction]] |
| − | == | + | == Reaction RXN0-2023 == |
| − | * | + | * direction: |
| − | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
| − | ** | + | ** trna-specific 2-thiouridylase |
| − | == Reaction | + | * ec-number: |
| − | * [[ | + | ** [http://enzyme.expasy.org/EC/2.8.1.13 ec-2.8.1.13] |
| − | == | + | == Reaction formula == |
| − | * [ | + | * 1 [[ATP]][c] '''+''' 1 [[Donor-H2]][c] '''+''' 1 [[TusE-S-sulfanylcysteine]][c] '''+''' 1 [[tRNA-uridine34]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Acceptor]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TusE-L-cysteine]][c] '''+''' 1 [[tRNA-2-thiouridine34]][c] |
| − | * [ | + | == Gene(s) associated with this reaction == |
| − | * [ | + | * Gene: [[SJ13939]] |
| − | * [ | + | ** Category: [[annotation]] |
| − | * [ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| − | * [ | + | * Gene: [[SJ00619]] |
| − | * [ | + | ** Category: [[annotation]] |
| − | * [ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| − | + | ** Category: [[orthology]] | |
| − | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
| − | + | == Pathway(s) == | |
| − | {{#set: | + | * [[PWY-7892]], tRNA-uridine 2-thiolation and selenation (bacteria): |
| − | {{#set: | + | ** '''3''' reactions found over '''11''' reactions in the full pathway |
| − | {{#set: nb | + | == Reconstruction information == |
| − | {{#set: | + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
| + | == External links == | ||
| + | * METANETX-RXN : MNXR123130 | ||
| + | {{#set: direction=left-to-right}} | ||
| + | {{#set: common-name=trna-specific 2-thiouridylase}} | ||
| + | {{#set: ec-number=ec-2.8.1.13}} | ||
| + | {{#set: nb gene associated=2}} | ||
| + | {{#set: nb pathway associated=1}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
| + | {{#set: reconstruction comment=n.a}} | ||
| + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} | ||
Latest revision as of 11:23, 18 March 2021
Contents
Reaction RXN0-2023
- direction:
- left-to-right
- common-name:
- trna-specific 2-thiouridylase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 Donor-H2[c] + 1 TusE-S-sulfanylcysteine[c] + 1 tRNA-uridine34[c] => 1 AMP[c] + 1 Acceptor[c] + 1 PPI[c] + 1 PROTON[c] + 1 TusE-L-cysteine[c] + 1 tRNA-2-thiouridine34[c]
Gene(s) associated with this reaction
- Gene: SJ13939
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ00619
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7892, tRNA-uridine 2-thiolation and selenation (bacteria):
- 3 reactions found over 11 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR123130
