Difference between revisions of "RXN0-2044"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE--TRNA-LIGASE-RXN ARGININE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-name...")
 
(Created page with "Category:reaction == Reaction RXN0-2044 == * direction: ** reversible * common-name: ** 3-hydroxyadipyl-coa dehydrogenase ** 3-hydroxyacyl-coa dehydrogenase * ec-number: *...")
 
(9 intermediate revisions by 4 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE--TRNA-LIGASE-RXN ARGININE--TRNA-LIGASE-RXN] ==
+
== Reaction RXN0-2044 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** arginine-trna ligase
+
** 3-hydroxyadipyl-coa dehydrogenase
 +
** 3-hydroxyacyl-coa dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.19 ec-6.1.1.19]
+
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ARG]][c] '''+''' 1 [[ARG-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ARG-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[3-HYDROXYADIPYL-COA]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-KETO-ADIPYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11647]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ17348]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01444]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07211]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05085]]
+
* Gene: [[SJ06127]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21390]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03584]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ16470]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13753]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY0-321]], phenylacetate degradation I (aerobic):
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-1361]], benzoyl-CoA degradation I (aerobic):
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR100555
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20302 20302]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34854 34854]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03646 R03646]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06941 R06941]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P40329 P40329]
+
{{#set: common-name=3-hydroxyadipyl-coa dehydrogenase|3-hydroxyacyl-coa dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/P35868 P35868]
+
{{#set: ec-number=ec-1.1.1.35}}
−
** [http://www.uniprot.org/uniprot/P43832 P43832]
+
{{#set: nb gene associated=8}}
−
** [http://www.uniprot.org/uniprot/O51540 O51540]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/O67068 O67068]
 
−
** [http://www.uniprot.org/uniprot/O59147 O59147]
 
−
** [http://www.uniprot.org/uniprot/O83803 O83803]
 
−
** [http://www.uniprot.org/uniprot/Q9ZE81 Q9ZE81]
 
−
** [http://www.uniprot.org/uniprot/Q9PNC0 Q9PNC0]
 
−
** [http://www.uniprot.org/uniprot/Q9X0H8 Q9X0H8]
 
−
** [http://www.uniprot.org/uniprot/P46906 P46906]
 
−
** [http://www.uniprot.org/uniprot/Q57689 Q57689]
 
−
** [http://www.uniprot.org/uniprot/O27496 O27496]
 
−
** [http://www.uniprot.org/uniprot/Q9JTM7 Q9JTM7]
 
−
** [http://www.uniprot.org/uniprot/Q9CE12 Q9CE12]
 
−
** [http://www.uniprot.org/uniprot/P56128 P56128]
 
−
** [http://www.uniprot.org/uniprot/P47618 P47618]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMB9 Q9ZMB9]
 
−
** [http://www.uniprot.org/uniprot/Q08888 Q08888]
 
−
** [http://www.uniprot.org/uniprot/P54136 P54136]
 
−
** [http://www.uniprot.org/uniprot/P38714 P38714]
 
−
** [http://www.uniprot.org/uniprot/Q05506 Q05506]
 
−
** [http://www.uniprot.org/uniprot/P75222 P75222]
 
−
** [http://www.uniprot.org/uniprot/P11875 P11875]
 
−
** [http://www.uniprot.org/uniprot/O23247 O23247]
 
−
** [http://www.uniprot.org/uniprot/O74781 O74781]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=arginine-trna ligase}}
 
−
{{#set: ec-number=ec-6.1.1.19}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN0-2044

  • direction:
    • reversible
  • common-name:
    • 3-hydroxyadipyl-coa dehydrogenase
    • 3-hydroxyacyl-coa dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-321, phenylacetate degradation I (aerobic):
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-1361, benzoyl-CoA degradation I (aerobic):
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR100555
  • RHEA:
  • LIGAND-RXN:





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