Difference between revisions of "RXN0-2382"

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(Created page with "Category:reaction == Reaction GDP-MANNOSE-6-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** gdp-mannose 6-dehydrogenase * ec-number: ** [http://enzyme...")
(Created page with "Category:reaction == Reaction RXN0-2382 == * direction: ** left-to-right * common-name: ** tryptophan synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4....")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GDP-MANNOSE-6-DEHYDROGENASE-RXN ==
+
== Reaction RXN0-2382 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** gdp-mannose 6-dehydrogenase
+
** tryptophan synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.132 ec-1.1.1.132]
+
** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GDP-MANNOSE]][c] '''+''' 2 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-1828]][c] '''+''' 2 [[NADH]][c] '''+''' 3 [[PROTON]][c]
+
* 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11033]]
+
* Gene: [[SJ09991]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16706]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20325]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03911]]
+
* Gene: [[SJ15468]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10955]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11024]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6073]], alginate biosynthesis I (algal):
+
* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6082]], alginate biosynthesis II (bacterial):
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR106733
+
* METANETX-RXN : MNXR104946
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21731 21731]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26435 26435]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00880 R00880]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P11759 P11759]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=gdp-mannose 6-dehydrogenase}}
+
{{#set: common-name=tryptophan synthase}}
−
{{#set: ec-number=ec-1.1.1.132}}
+
{{#set: ec-number=ec-4.2.1.122}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction RXN0-2382

  • direction:
    • left-to-right
  • common-name:
    • tryptophan synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRPSYN-PWY, L-tryptophan biosynthesis:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR104946
  • RHEA:
  • LIGAND-RXN:





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