Difference between revisions of "RXN0-361"

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(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALISOM-RXN == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydratase ** (2s)-2-isopropylmalate hydro-lyase (2...")
(Created page with "Category:reaction == Reaction RXN-15712 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7] == Reaction formula == * 1 3-Hy...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction 3-ISOPROPYLMALISOM-RXN ==
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== Reaction RXN-15712 ==
 
* direction:
 
* direction:
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** reversible
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** left-to-right
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* common-name:
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* ec-number:
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** 3-isopropylmalate dehydratase
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** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7]
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** (2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
 
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* synonymous:
 
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** α-isopropylmalate isomerase
 
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** 3-isopropylmalate hydro-lyase
 
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** (2r,3s)-3-isopropylmalate hydro-lyase
 
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** β-isopropylmalate dehydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
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* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[ADP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22396]]
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* Gene: [[SJ15543]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ09771]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[LEUSYN-PWY]], L-leucine biosynthesis:
 
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** '''5''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
 
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** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: direction=left-to-right}}
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* RHEA:
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{{#set: ec-number=ec-6.5.1.7}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16296 16296]
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{{#set: nb gene associated=1}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=0}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
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{{#set: reconstruction category=annotation}}
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* UNIPROT:
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
 
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** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
 
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** [http://www.uniprot.org/uniprot/P80858 P80858]
 
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** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
 
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** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
 
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** [http://www.uniprot.org/uniprot/Q58673 Q58673]
 
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** [http://www.uniprot.org/uniprot/Q02144 Q02144]
 
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** [http://www.uniprot.org/uniprot/P44968 P44968]
 
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** [http://www.uniprot.org/uniprot/Q58667 Q58667]
 
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** [http://www.uniprot.org/uniprot/P44438 P44438]
 
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** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
 
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** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
 
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** [http://www.uniprot.org/uniprot/Q44022 Q44022]
 
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** [http://www.uniprot.org/uniprot/Q44023 Q44023]
 
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** [http://www.uniprot.org/uniprot/Q44427 Q44427]
 
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** [http://www.uniprot.org/uniprot/P17279 P17279]
 
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** [http://www.uniprot.org/uniprot/P04787 P04787]
 
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** [http://www.uniprot.org/uniprot/P15717 P15717]
 
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** [http://www.uniprot.org/uniprot/P18250 P18250]
 
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** [http://www.uniprot.org/uniprot/Q02142 Q02142]
 
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** [http://www.uniprot.org/uniprot/P30126 P30126]
 
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** [http://www.uniprot.org/uniprot/P50181 P50181]
 
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** [http://www.uniprot.org/uniprot/P07264 P07264]
 
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** [http://www.uniprot.org/uniprot/P74207 P74207]
 
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** [http://www.uniprot.org/uniprot/O86534 O86534]
 
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** [http://www.uniprot.org/uniprot/O86535 O86535]
 
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</div>
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=(2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)|3-isopropylmalate dehydratase}}
 
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{{#set: synonymous=&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase|(2r,3s)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
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{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:23, 15 January 2021

Reaction RXN-15712

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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