Difference between revisions of "RXN0-361"

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(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALISOM-RXN == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydratase ** (2s)-2-isopropylmalate hydro-lyase (2...")
(Created page with "Category:reaction == Reaction RXN0-361 == * direction: ** left-to-right * common-name: ** uridine nucleosidase * ec-number: ** [http://enzyme.expasy.org/EC/3.2.2.3 ec-3.2....")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-ISOPROPYLMALISOM-RXN ==
+
== Reaction RXN0-361 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-isopropylmalate dehydratase
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** uridine nucleosidase
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** (2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
+
* ec-number:
−
* synonymous:
+
** [http://enzyme.expasy.org/EC/3.2.2.3 ec-3.2.2.3]
−
** α-isopropylmalate isomerase
 
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** 3-isopropylmalate hydro-lyase
 
−
** (2r,3s)-3-isopropylmalate hydro-lyase
 
−
** β-isopropylmalate dehydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
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* 1 [[CYTIDINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CYTOSINE]][c] '''+''' 1 [[D-Ribofuranose]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22396]]
+
* Gene: [[SJ07903]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09771]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LEUSYN-PWY]], L-leucine biosynthesis:
+
* [[PWY-7195]], pyrimidine ribonucleosides salvage III:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR97040
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16296 16296]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27959 27959]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
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** [http://www.genome.jp/dbget-bin/www_bget?R02137 R02137]
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* UNIPROT:
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{{#set: direction=left-to-right}}
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** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
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{{#set: common-name=uridine nucleosidase}}
−
** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
+
{{#set: ec-number=ec-3.2.2.3}}
−
** [http://www.uniprot.org/uniprot/P80858 P80858]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q58673 Q58673]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q02144 Q02144]
 
−
** [http://www.uniprot.org/uniprot/P44968 P44968]
 
−
** [http://www.uniprot.org/uniprot/Q58667 Q58667]
 
−
** [http://www.uniprot.org/uniprot/P44438 P44438]
 
−
** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
 
−
** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
 
−
** [http://www.uniprot.org/uniprot/Q44022 Q44022]
 
−
** [http://www.uniprot.org/uniprot/Q44023 Q44023]
 
−
** [http://www.uniprot.org/uniprot/Q44427 Q44427]
 
−
** [http://www.uniprot.org/uniprot/P17279 P17279]
 
−
** [http://www.uniprot.org/uniprot/P04787 P04787]
 
−
** [http://www.uniprot.org/uniprot/P15717 P15717]
 
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** [http://www.uniprot.org/uniprot/P18250 P18250]
 
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** [http://www.uniprot.org/uniprot/Q02142 Q02142]
 
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** [http://www.uniprot.org/uniprot/P30126 P30126]
 
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** [http://www.uniprot.org/uniprot/P50181 P50181]
 
−
** [http://www.uniprot.org/uniprot/P07264 P07264]
 
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** [http://www.uniprot.org/uniprot/P74207 P74207]
 
−
** [http://www.uniprot.org/uniprot/O86534 O86534]
 
−
** [http://www.uniprot.org/uniprot/O86535 O86535]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=(2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)|3-isopropylmalate dehydratase}}
 
−
{{#set: synonymous=&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase|(2r,3s)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN0-361

  • direction:
    • left-to-right
  • common-name:
    • uridine nucleosidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7195, pyrimidine ribonucleosides salvage III:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR97040
  • RHEA:
  • LIGAND-RXN:





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