Difference between revisions of "RXN0-4261"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] == * direction: ** reversible * common-name: ** ornith...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.25.1-RXN 3.4.25.1-RXN] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.o...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.25.1-RXN 3.4.25.1-RXN] ==
 
* direction:
 
* direction:
** reversible
+
** left-to-right
* common-name:
 
** ornithine carbamoyltransferase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.1.3.3 ec-2.1.3.3]
+
** [http://enzyme.expasy.org/EC/3.4.25.1 ec-3.4.25.1]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[L-CITRULLINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ18541]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ19380]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21371]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03239]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05254]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05154]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01422]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20471]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22206]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14598]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07403]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01745]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01731]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19146]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13891]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02909]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07036]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19736]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21105]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21621]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20307]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14712]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10772]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00010]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08098]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07149]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08597]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16267]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13417]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20163]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10684]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ01580]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19500]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07129]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00759]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11002]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18021]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
* [[CITRULLINE-DEG-PWY]], L-citrulline degradation: [http://metacyc.org/META/NEW-IMAGE?object=CITRULLINE-DEG-PWY CITRULLINE-DEG-PWY]
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
 
** '''5''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
 
** '''3''' reactions found over '''6''' reactions in the full pathway
 
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
 
** '''7''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19516 19516]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01398 R01398]
 
 
* UNIPROT:
 
* UNIPROT:
** [http://www.uniprot.org/uniprot/Q58291 Q58291]
+
** [http://www.uniprot.org/uniprot/Q7DLR9 Q7DLR9]
** [http://www.uniprot.org/uniprot/Q9CHD1 Q9CHD1]
+
** [http://www.uniprot.org/uniprot/P28062 P28062]
** [http://www.uniprot.org/uniprot/Q7M182 Q7M182]
+
** [http://www.uniprot.org/uniprot/Q9TRJ7 Q9TRJ7]
** [http://www.uniprot.org/uniprot/Q9JTI4 Q9JTI4]
+
** [http://www.uniprot.org/uniprot/P30656 P30656]
** [http://www.uniprot.org/uniprot/P11727 P11727]
+
** [http://www.uniprot.org/uniprot/P30657 P30657]
** [http://www.uniprot.org/uniprot/Q9CEY4 Q9CEY4]
+
** [http://www.uniprot.org/uniprot/P28074 P28074]
** [http://www.uniprot.org/uniprot/Q9CE14 Q9CE14]
+
** [http://www.uniprot.org/uniprot/P40302 P40302]
** [http://www.uniprot.org/uniprot/Q9PNU6 Q9PNU6]
+
** [http://www.uniprot.org/uniprot/O24633 O24633]
** [http://www.uniprot.org/uniprot/P44770 P44770]
+
** [http://www.uniprot.org/uniprot/P40303 P40303]
** [http://www.uniprot.org/uniprot/Q9YHY9 Q9YHY9]
+
** [http://www.uniprot.org/uniprot/Q9V122 Q9V122]
** [http://www.uniprot.org/uniprot/P11066 P11066]
+
** [http://www.uniprot.org/uniprot/P40306 P40306]
** [http://www.uniprot.org/uniprot/P11803 P11803]
+
** [http://www.uniprot.org/uniprot/P28063 P28063]
** [http://www.uniprot.org/uniprot/P18186 P18186]
+
** [http://www.uniprot.org/uniprot/P25786 P25786]
** [http://www.uniprot.org/uniprot/P05150 P05150]
+
** [http://www.uniprot.org/uniprot/P28076 P28076]
** [http://www.uniprot.org/uniprot/P14995 P14995]
+
** [http://www.uniprot.org/uniprot/O13268 O13268]
** [http://www.uniprot.org/uniprot/P06960 P06960]
+
** [http://www.uniprot.org/uniprot/P34064 P34064]
** [http://www.uniprot.org/uniprot/P04391 P04391]
+
** [http://www.uniprot.org/uniprot/P60901 P60901]
** [http://www.uniprot.org/uniprot/P00480 P00480]
+
** [http://www.uniprot.org/uniprot/P18421 P18421]
** [http://www.uniprot.org/uniprot/P11725 P11725]
+
** [http://www.uniprot.org/uniprot/P18053 P18053]
** [http://www.uniprot.org/uniprot/P21302 P21302]
+
** [http://www.uniprot.org/uniprot/P28072 P28072]
** [http://www.uniprot.org/uniprot/P11724 P11724]
+
** [http://www.uniprot.org/uniprot/P22769 P22769]
** [http://www.uniprot.org/uniprot/P08308 P08308]
+
** [http://www.uniprot.org/uniprot/P25043 P25043]
** [http://www.uniprot.org/uniprot/P68747 P68747]
+
** [http://www.uniprot.org/uniprot/P28065 P28065]
** [http://www.uniprot.org/uniprot/P00481 P00481]
+
** [http://www.uniprot.org/uniprot/P30186 P30186]
** [http://www.uniprot.org/uniprot/P31317 P31317]
+
** [http://www.uniprot.org/uniprot/P60900 P60900]
** [http://www.uniprot.org/uniprot/Q01322 Q01322]
+
** [http://www.uniprot.org/uniprot/P34065 P34065]
** [http://www.uniprot.org/uniprot/Q01323 Q01323]
+
** [http://www.uniprot.org/uniprot/P34067 P34067]
** [http://www.uniprot.org/uniprot/Q01324 Q01324]
+
** [http://www.uniprot.org/uniprot/P40301 P40301]
** [http://www.uniprot.org/uniprot/Q01326 Q01326]
+
** [http://www.uniprot.org/uniprot/Q8AVD2 Q8AVD2]
** [http://www.uniprot.org/uniprot/Q01325 Q01325]
+
** [http://www.uniprot.org/uniprot/Q7LZF1 Q7LZF1]
** [http://www.uniprot.org/uniprot/Q9JYI3 Q9JYI3]
+
** [http://www.uniprot.org/uniprot/P40307 P40307]
** [http://www.uniprot.org/uniprot/Q01327 Q01327]
+
** [http://www.uniprot.org/uniprot/P23724 P23724]
** [http://www.uniprot.org/uniprot/P0A5M9 P0A5M9]
+
** [http://www.uniprot.org/uniprot/P28070 P28070]
** [http://www.uniprot.org/uniprot/Q02047 Q02047]
+
** [http://www.uniprot.org/uniprot/P22141 P22141]
** [http://www.uniprot.org/uniprot/Q9TRC9 Q9TRC9]
+
** [http://www.uniprot.org/uniprot/P49721 P49721]
** [http://www.uniprot.org/uniprot/Q48296 Q48296]
+
** [http://www.uniprot.org/uniprot/P49720 P49720]
** [http://www.uniprot.org/uniprot/P75473 P75473]
+
** [http://www.uniprot.org/uniprot/P25156 P25156]
** [http://www.uniprot.org/uniprot/Q49080 Q49080]
+
** [http://www.uniprot.org/uniprot/Q09682 Q09682]
** [http://www.uniprot.org/uniprot/Q43814 Q43814]
+
** [http://www.uniprot.org/uniprot/Q09720 Q09720]
** [http://www.uniprot.org/uniprot/O53089 O53089]
+
** [http://www.uniprot.org/uniprot/P48004 P48004]
** [http://www.uniprot.org/uniprot/O50039 O50039]
+
** [http://www.uniprot.org/uniprot/P38624 P38624]
 +
** [http://www.uniprot.org/uniprot/P32379 P32379]
 +
** [http://www.uniprot.org/uniprot/Q7LZF0 Q7LZF0]
 +
** [http://www.uniprot.org/uniprot/P62333 P62333]
 +
** [http://www.uniprot.org/uniprot/Q24178 Q24178]
 +
** [http://www.uniprot.org/uniprot/Q27575 Q27575]
 +
** [http://www.uniprot.org/uniprot/P21242 P21242]
 +
** [http://www.uniprot.org/uniprot/P21243 P21243]
 +
** [http://www.uniprot.org/uniprot/P23638 P23638]
 +
** [http://www.uniprot.org/uniprot/P23639 P23639]
 +
** [http://www.uniprot.org/uniprot/P12881 P12881]
 +
** [http://www.uniprot.org/uniprot/P25787 P25787]
 +
** [http://www.uniprot.org/uniprot/P20618 P20618]
 +
** [http://www.uniprot.org/uniprot/P25788 P25788]
 +
** [http://www.uniprot.org/uniprot/P25789 P25789]
 +
** [http://www.uniprot.org/uniprot/P18420 P18420]
 +
** [http://www.uniprot.org/uniprot/P18422 P18422]
 +
** [http://www.uniprot.org/uniprot/P21670 P21670]
 +
** [http://www.uniprot.org/uniprot/P52428 P52428]
 +
** [http://www.uniprot.org/uniprot/P93395 P93395]
 +
** [http://www.uniprot.org/uniprot/O04861 O04861]
 +
** [http://www.uniprot.org/uniprot/Q8LD27 Q8LD27]
 +
** [http://www.uniprot.org/uniprot/O48551 O48551]
 +
** [http://www.uniprot.org/uniprot/O24030 O24030]
 +
** [http://www.uniprot.org/uniprot/P42742 P42742]
 +
** [http://www.uniprot.org/uniprot/O81147 O81147]
 +
** [http://www.uniprot.org/uniprot/O23708 O23708]
 +
** [http://www.uniprot.org/uniprot/O24616 O24616]
 +
** [http://www.uniprot.org/uniprot/O81149 O81149]
 +
** [http://www.uniprot.org/uniprot/Q42134 Q42134]
 +
** [http://www.uniprot.org/uniprot/P34066 P34066]
 +
** [http://www.uniprot.org/uniprot/O23712 O23712]
 +
** [http://www.uniprot.org/uniprot/O23710 O23710]
 +
** [http://www.uniprot.org/uniprot/Q7DLS1 Q7DLS1]
 +
** [http://www.uniprot.org/uniprot/O81153 O81153]
 +
** [http://www.uniprot.org/uniprot/O23714 O23714]
 
</div>
 
</div>
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
{{#set: common-name=ornithine carbamoyltransferase}}
+
{{#set: ec-number=ec-3.4.25.1}}
{{#set: ec-number=ec-2.1.3.3}}
+
{{#set: nb gene associated=37}}
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=0}}
{{#set: nb pathway associated=7}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:25, 26 August 2019

Reaction 3.4.25.1-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links