Difference between revisions of "RXN0-5038"

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(Created page with "Category:reaction == Reaction RXN0-1461 == * direction: ** left-to-right * common-name: ** coproporphyrinogen oxidase ** coproporphyrinogen iii oxidase * ec-number: ** [ht...")
(Created page with "Category:reaction == Reaction RXN0-5038 == * direction: ** left-to-right * common-name: ** 3',5'-cyclic-amp phosphodiesterase ** camp phosphodiesterase * ec-number: ** [ht...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-1461 ==
+
== Reaction RXN0-5038 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** coproporphyrinogen oxidase
+
** 3',5'-cyclic-amp phosphodiesterase
−
** coproporphyrinogen iii oxidase
+
** camp phosphodiesterase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.3 ec-1.3.3.3]
+
** [http://enzyme.expasy.org/EC/3.1.4.53 ec-3.1.4.53]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[CAMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11059]]
+
* Gene: [[SJ04705]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ09726]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05457]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ15840]]
+
* Gene: [[SJ10845]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14526]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18679]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 
−
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR95886
−
* METANETX-RXN : MNXR96880
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18258 18258]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25278 25278]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00191 R00191]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
 
−
** [http://www.uniprot.org/uniprot/P36552 P36552]
 
−
** [http://www.uniprot.org/uniprot/O25376 O25376]
 
−
** [http://www.uniprot.org/uniprot/P36553 P36553]
 
−
** [http://www.uniprot.org/uniprot/P33771 P33771]
 
−
** [http://www.uniprot.org/uniprot/P43899 P43899]
 
−
** [http://www.uniprot.org/uniprot/O25824 O25824]
 
−
** [http://www.uniprot.org/uniprot/P54304 P54304]
 
−
** [http://www.uniprot.org/uniprot/P11353 P11353]
 
−
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
 
−
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
 
−
** [http://www.uniprot.org/uniprot/P36551 P36551]
 
−
** [http://www.uniprot.org/uniprot/P35055 P35055]
 
−
** [http://www.uniprot.org/uniprot/P43898 P43898]
 
−
** [http://www.uniprot.org/uniprot/P72848 P72848]
 
−
** [http://www.uniprot.org/uniprot/P73245 P73245]
 
−
** [http://www.uniprot.org/uniprot/P74132 P74132]
 
−
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
 
−
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
 
−
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
 
−
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
 
−
** [http://www.uniprot.org/uniprot/P95651 P95651]
 
−
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=coproporphyrinogen iii oxidase|coproporphyrinogen oxidase}}
+
{{#set: common-name=3',5'-cyclic-amp phosphodiesterase|camp phosphodiesterase}}
−
{{#set: ec-number=ec-1.3.3.3}}
+
{{#set: ec-number=ec-3.1.4.53}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN0-5038

  • direction:
    • left-to-right
  • common-name:
    • 3',5'-cyclic-amp phosphodiesterase
    • camp phosphodiesterase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR95886
  • RHEA:
  • LIGAND-RXN:





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