Difference between revisions of "RXN0-5055"

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(Created page with "Category:reaction == Reaction ENOYL-COA-DELTA-ISOM-RXN == * direction: ** reversible * common-name: ** δ3-cis-δ2-trans-enoyl-coa isomerase * ec-number: ** [htt...")
(Created page with "Category:reaction == Reaction RXN-10642 == * direction: ** left-to-right * common-name: ** uroporphyrinogen i decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ENOYL-COA-DELTA-ISOM-RXN ==
+
== Reaction RXN-10642 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** δ3-cis-δ2-trans-enoyl-coa isomerase
+
** uroporphyrinogen i decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.3.8 ec-5.3.3.8]
+
** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37]
−
* synonymous:
 
−
** probable enoyl coa-hydratase/isomerase
 
−
** probable enoyl-coa hydratase/isomerase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CIS-DELTA3-ENOYL-COA]][c] '''<=>''' 1 [[TRANS-D2-ENOYL-COA]][c]
+
* 1 [[CPD-11444]][c] '''+''' 4 [[PROTON]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_I]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22166]]
+
* Gene: [[SJ09367]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07211]]
+
* Gene: [[SJ09370]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ11169]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03594]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5137]], fatty acid &beta;-oxidation III (unsaturated, odd number):
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/P21177 P21177]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31239 31239]
−
** [http://www.uniprot.org/uniprot/P42126 P42126]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P07896 P07896]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04972 R04972]
−
** [http://www.uniprot.org/uniprot/P23965 P23965]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q64592 Q64592]
+
{{#set: common-name=uroporphyrinogen i decarboxylase}}
−
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
+
{{#set: ec-number=ec-4.1.1.37}}
−
** [http://www.uniprot.org/uniprot/P42125 P42125]
 
−
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=&delta;3-cis-&delta;2-trans-enoyl-coa isomerase}}
 
−
{{#set: ec-number=ec-5.3.3.8}}
 
−
{{#set: synonymous=probable enoyl-coa hydratase/isomerase|probable enoyl coa-hydratase/isomerase}}
 
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:03, 14 January 2021

Reaction RXN-10642

  • direction:
    • left-to-right
  • common-name:
    • uroporphyrinogen i decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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