Difference between revisions of "RXN0-5063"

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(Created page with "Category:reaction == Reaction RXN-11667 == * direction: ** reversible * common-name: ** (s)-3-hydroxybutanoyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction 2.7.7.15-RXN == * direction: ** left-to-right * common-name: ** choline-phosphate cytidylyltransferase * ec-number: ** [http://enzyme.expasy....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11667 ==
+
== Reaction 2.7.7.15-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** (s)-3-hydroxybutanoyl-coa dehydrogenase
+
** choline-phosphate cytidylyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.150 ec-4.2.1.150]
+
** [http://enzyme.expasy.org/EC/2.7.7.15 ec-2.7.7.15]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[S-3-HYDROXYBUTANOYL-COA]][c] '''<=>''' 1 [[CROTONYL-COA]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CTP]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CDP-CHOLINE]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03584]]
+
* Gene: [[SJ19268]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03913]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
−
** Category: [[orthology]]
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5177]], glutaryl-CoA degradation:
+
* [[PWY-7886]], cell-surface glycoconjugate-linked phosphocholine biosynthesis:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered):
+
* [[PWY3O-450]], phosphatidylcholine biosynthesis I:
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate:
+
* [[PWY-3561]], choline biosynthesis III:
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6583]], pyruvate fermentation to butanol I:
+
* [[PWY-7818]], type IV lipoteichoic acid biosynthesis (S. pneumoniae):
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''19''' reactions in the full pathway
−
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered):
+
* [[PWY4FS-2]], phosphatidylcholine biosynthesis II:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
+
* [[PWY-7782]], plasmalogen biosynthesis:
−
** '''8''' reactions found over '''18''' reactions in the full pathway
+
** '''11''' reactions found over '''16''' reactions in the full pathway
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P3-PWY]], gallate degradation III (anaerobic):
 
−
** '''3''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
 
−
** '''6''' reactions found over '''15''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26561 26561]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18998 18998]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03026 R03026]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01890 R01890]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=(s)-3-hydroxybutanoyl-coa dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/P19836 P19836]
−
{{#set: ec-number=ec-4.2.1.150}}
+
** [http://www.uniprot.org/uniprot/P49586 P49586]
−
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/P49584 P49584]
−
{{#set: nb pathway associated=9}}
+
** [http://www.uniprot.org/uniprot/P49585 P49585]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P49587 P49587]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P93470 P93470]
 +
** [http://www.uniprot.org/uniprot/Q42619 Q42619]
 +
** [http://www.uniprot.org/uniprot/Q42620 Q42620]
 +
** [http://www.uniprot.org/uniprot/Q42621 Q42621]
 +
** [http://www.uniprot.org/uniprot/Q42622 Q42622]
 +
** [http://www.uniprot.org/uniprot/P13259 P13259]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=choline-phosphate cytidylyltransferase}}
 +
{{#set: ec-number=ec-2.7.7.15}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=6}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:00, 5 January 2021

Reaction 2.7.7.15-RXN

  • direction:
    • left-to-right
  • common-name:
    • choline-phosphate cytidylyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7886, cell-surface glycoconjugate-linked phosphocholine biosynthesis:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY3O-450, phosphatidylcholine biosynthesis I:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-3561, choline biosynthesis III:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7818, type IV lipoteichoic acid biosynthesis (S. pneumoniae):
    • 2 reactions found over 19 reactions in the full pathway
  • PWY4FS-2, phosphatidylcholine biosynthesis II:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7782, plasmalogen biosynthesis:
    • 11 reactions found over 16 reactions in the full pathway

Reconstruction information

External links





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