Difference between revisions of "RXN0-5131"
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(Created page with "Category:reaction == Reaction RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45. == * direction: ** reversible == Reaction formula == * 1.0 CPD-4101[c] '''+'''...") |
(Created page with "Category:reaction == Reaction SHIKIMATE-KINASE-RXN == * direction: ** reversible * common-name: ** shikimate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.71 e...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction SHIKIMATE-KINASE-RXN == |
* direction: | * direction: | ||
** reversible | ** reversible | ||
+ | * common-name: | ||
+ | ** shikimate kinase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.7.1.71 ec-2.7.1.71] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[ATP]][c] '''+''' 1 [[SHIKIMATE]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SHIKIMATE-5P]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
+ | * Gene: [[SJ05909]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ04949]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ10493]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: | ||
+ | ** '''6''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13124 13124] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02412 R02412] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P0A6D7 P0A6D7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIB5 Q9PIB5] | ||
+ | ** [http://www.uniprot.org/uniprot/P07547 P07547] | ||
+ | ** [http://www.uniprot.org/uniprot/P08566 P08566] | ||
+ | ** [http://www.uniprot.org/uniprot/P43880 P43880] | ||
+ | ** [http://www.uniprot.org/uniprot/P63600 P63600] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CEU1 Q9CEU1] | ||
+ | ** [http://www.uniprot.org/uniprot/P37944 P37944] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A6E1 P0A6E1] | ||
+ | ** [http://www.uniprot.org/uniprot/P10880 P10880] | ||
+ | ** [http://www.uniprot.org/uniprot/Q00497 Q00497] | ||
+ | ** [http://www.uniprot.org/uniprot/P34003 P34003] | ||
+ | ** [http://www.uniprot.org/uniprot/P43906 P43906] | ||
+ | ** [http://www.uniprot.org/uniprot/P72796 P72796] | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
− | {{#set: nb gene associated= | + | {{#set: common-name=shikimate kinase}} |
− | {{#set: nb pathway associated= | + | {{#set: ec-number=ec-2.7.1.71}} |
− | {{#set: reconstruction category= | + | {{#set: nb gene associated=3}} |
− | {{#set: reconstruction tool= | + | {{#set: nb pathway associated=1}} |
− | {{#set: reconstruction comment= | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction source= | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:22, 15 January 2021
Contents
Reaction SHIKIMATE-KINASE-RXN
- direction:
- reversible
- common-name:
- shikimate kinase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 SHIKIMATE[c] <=> 1 ADP[c] + 1 PROTON[c] + 1 SHIKIMATE-5P[c]
Gene(s) associated with this reaction
- Gene: SJ05909
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ04949
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ10493
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
- 6 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: