Difference between revisions of "RXN0-5144"

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(Created page with "Category:reaction == Reaction UROGENDECARBOX-RXN == * direction: ** left-to-right * common-name: ** uroporphyrinogen decarboxylase * ec-number: ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction 3.1.27.5-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.1.27.5 ec-3.1.27.5] == Reaction formula == * 1 [...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UROGENDECARBOX-RXN ==
+
== Reaction 3.1.27.5-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** uroporphyrinogen decarboxylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37]
+
** [http://enzyme.expasy.org/EC/3.1.27.5 ec-3.1.27.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
+
* 1 [[RNA-Holder]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[3-Phosphomonucleotides]][c] '''+''' 1 [[3-phosphooligoribonucleotides]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09367]]
+
* Gene: [[SJ12696]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03594]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09370]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7766]], heme b biosynthesis IV (Gram-positive bacteria):
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 
−
** '''5''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19866 19866]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06132 P06132]
+
** [http://www.uniprot.org/uniprot/P19640 P19640]
−
** [http://www.uniprot.org/uniprot/P16891 P16891]
+
** [http://www.uniprot.org/uniprot/P08904 P08904]
−
** [http://www.uniprot.org/uniprot/P32395 P32395]
+
** [http://www.uniprot.org/uniprot/P19644 P19644]
−
** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
+
** [http://www.uniprot.org/uniprot/P07998 P07998]
−
** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
+
** [http://www.uniprot.org/uniprot/P81649 P81649]
−
** [http://www.uniprot.org/uniprot/P29680 P29680]
+
** [http://www.uniprot.org/uniprot/P14626 P14626]
−
** [http://www.uniprot.org/uniprot/P32347 P32347]
+
** [http://www.uniprot.org/uniprot/P15467 P15467]
−
** [http://www.uniprot.org/uniprot/P32920 P32920]
+
** [http://www.uniprot.org/uniprot/P00658 P00658]
−
** [http://www.uniprot.org/uniprot/P54224 P54224]
+
** [http://www.uniprot.org/uniprot/P00659 P00659]
−
** [http://www.uniprot.org/uniprot/O81220 O81220]
+
** [http://www.uniprot.org/uniprot/P61823 P61823]
−
** [http://www.uniprot.org/uniprot/P70697 P70697]
+
** [http://www.uniprot.org/uniprot/P00669 P00669]
 +
** [http://www.uniprot.org/uniprot/P00675 P00675]
 +
** [http://www.uniprot.org/uniprot/P67928 P67928]
 +
** [http://www.uniprot.org/uniprot/P67929 P67929]
 +
** [http://www.uniprot.org/uniprot/P00676 P00676]
 +
** [http://www.uniprot.org/uniprot/P00665 P00665]
 +
** [http://www.uniprot.org/uniprot/P00666 P00666]
 +
** [http://www.uniprot.org/uniprot/P00664 P00664]
 +
** [http://www.uniprot.org/uniprot/P00663 P00663]
 +
** [http://www.uniprot.org/uniprot/P00667 P00667]
 +
** [http://www.uniprot.org/uniprot/P00662 P00662]
 +
** [http://www.uniprot.org/uniprot/P00660 P00660]
 +
** [http://www.uniprot.org/uniprot/P00678 P00678]
 +
** [http://www.uniprot.org/uniprot/P00679 P00679]
 +
** [http://www.uniprot.org/uniprot/P67926 P67926]
 +
** [http://www.uniprot.org/uniprot/P00674 P00674]
 +
** [http://www.uniprot.org/uniprot/P00672 P00672]
 +
** [http://www.uniprot.org/uniprot/P00682 P00682]
 +
** [http://www.uniprot.org/uniprot/P00686 P00686]
 +
** [http://www.uniprot.org/uniprot/P04059 P04059]
 +
** [http://www.uniprot.org/uniprot/P00683 P00683]
 +
** [http://www.uniprot.org/uniprot/P00685 P00685]
 +
** [http://www.uniprot.org/uniprot/P00681 P00681]
 +
** [http://www.uniprot.org/uniprot/P00671 P00671]
 +
** [http://www.uniprot.org/uniprot/P04060 P04060]
 +
** [http://www.uniprot.org/uniprot/P00668 P00668]
 +
** [http://www.uniprot.org/uniprot/P00684 P00684]
 +
** [http://www.uniprot.org/uniprot/P67927 P67927]
 +
** [http://www.uniprot.org/uniprot/P04061 P04061]
 +
** [http://www.uniprot.org/uniprot/P00680 P00680]
 +
** [http://www.uniprot.org/uniprot/P00657 P00657]
 +
** [http://www.uniprot.org/uniprot/P00673 P00673]
 +
** [http://www.uniprot.org/uniprot/P00677 P00677]
 +
** [http://www.uniprot.org/uniprot/P16414 P16414]
 +
** [http://www.uniprot.org/uniprot/P07847 P07847]
 +
** [http://www.uniprot.org/uniprot/P07848 P07848]
 +
** [http://www.uniprot.org/uniprot/P07849 P07849]
 +
** [http://www.uniprot.org/uniprot/P39873 P39873]
 +
** [http://www.uniprot.org/uniprot/P24717 P24717]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=uroporphyrinogen decarboxylase}}
+
{{#set: ec-number=ec-3.1.27.5}}
−
{{#set: ec-number=ec-4.1.1.37}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=7}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 08:34, 15 March 2021

Reaction 3.1.27.5-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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