Difference between revisions of "RXN0-5144"

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(Created page with "Category:reaction == Reaction UROGENDECARBOX-RXN == * direction: ** left-to-right * common-name: ** uroporphyrinogen decarboxylase * ec-number: ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction RXN0-5144 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.61 ec-2.1.1.61] == Reaction formula == * 1 S-...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UROGENDECARBOX-RXN ==
+
== Reaction RXN0-5144 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** uroporphyrinogen decarboxylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37]
+
** [http://enzyme.expasy.org/EC/2.1.1.61 ec-2.1.1.61]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
+
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[tRNA-Containing-5AminoMe-2-ThioUrdines]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[tRNA-Containing-5MeAminoMe-2-ThioU]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09367]]
+
* Gene: [[SJ13939]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03594]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09370]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7766]], heme b biosynthesis IV (Gram-positive bacteria):
+
* [[PWY-7892]], tRNA-uridine 2-thiolation and selenation (bacteria):
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''11''' reactions in the full pathway
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 
−
** '''5''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR123209
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19866 19866]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19570 19570]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00601 R00601]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06132 P06132]
+
** [http://www.uniprot.org/uniprot/Q9PJ66 Q9PJ66]
−
** [http://www.uniprot.org/uniprot/P16891 P16891]
 
−
** [http://www.uniprot.org/uniprot/P32395 P32395]
 
−
** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
 
−
** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
 
−
** [http://www.uniprot.org/uniprot/P29680 P29680]
 
−
** [http://www.uniprot.org/uniprot/P32347 P32347]
 
−
** [http://www.uniprot.org/uniprot/P32920 P32920]
 
−
** [http://www.uniprot.org/uniprot/P54224 P54224]
 
−
** [http://www.uniprot.org/uniprot/O81220 O81220]
 
−
** [http://www.uniprot.org/uniprot/P70697 P70697]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=uroporphyrinogen decarboxylase}}
+
{{#set: ec-number=ec-2.1.1.61}}
−
{{#set: ec-number=ec-4.1.1.37}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=7}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN0-5144

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7892, tRNA-uridine 2-thiolation and selenation (bacteria):
    • 3 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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