Difference between revisions of "RXN0-5180"

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(Created page with "Category:reaction == Reaction CHD-RXN == * direction: ** reversible * common-name: ** choline dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.99.1 ec-1.1.99...")
(Created page with "Category:reaction == Reaction ATDGD == * direction: ** left-to-right * common-name: ** atp:dgdp phosphotransferase == Reaction formula == * 1.0 ATP[c] '''+''' 1.0 DG...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction CHD-RXN ==
+
== Reaction ATDGD ==
 
* direction:
 
* direction:
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
** choline dehydrogenase
+
** atp:dgdp phosphotransferase
* ec-number:
 
** [http://enzyme.expasy.org/EC/1.1.99.1 ec-1.1.99.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[Acceptor]][c] '''+''' 1 [[CHOLINE]][c] '''<=>''' 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[Donor-H2]][c]
+
* 1.0 [[ATP]][c] '''+''' 1.0 [[DGDP]][c] '''=>''' 1.0 [[ADP]][c] '''+''' 1.0 [[DGTP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ12409]]
+
* Gene: [[SJ10125]]
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ09287]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ06047]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ22552]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ07158]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria):
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I:
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: direction=left-to-right}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17436 17436]
+
{{#set: common-name=atp:dgdp phosphotransferase}}
* LIGAND-RXN:
+
{{#set: nb gene associated=1}}
** [http://www.genome.jp/dbget-bin/www_bget?R01025 R01025]
+
{{#set: nb pathway associated=0}}
* UNIPROT:
+
{{#set: reconstruction category=orthology}}
** [http://www.uniprot.org/uniprot/P17444 P17444]
+
{{#set: reconstruction tool=pantograph}}
{{#set: direction=reversible}}
 
{{#set: common-name=choline dehydrogenase}}
 
{{#set: ec-number=ec-1.1.99.1}}
 
{{#set: nb gene associated=5}}
 
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 19:05, 14 January 2021

Reaction ATDGD

  • direction:
    • left-to-right
  • common-name:
    • atp:dgdp phosphotransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links