Difference between revisions of "RXN0-5180"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-58024 tax-580...")
 
(Created page with "Category:reaction == Reaction RXN0-5180 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1 ec-2.5.1] == Reaction formula == * 1 DELTA3-I...")
 
(9 intermediate revisions by 5 users not shown)
Line 1: Line 1:
−
[[Category:pathway]]
+
[[Category:reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] ==
+
== Reaction RXN0-5180 ==
−
* taxonomic-range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-58024 tax-58024]
+
** left-to-right
−
* common-name:
+
* ec-number:
−
** phenylpropanoid biosynthesis
+
** [http://enzyme.expasy.org/EC/2.5.1 ec-2.5.1]
−
== Reaction(s) found ==
+
== Reaction formula ==
−
* [[4-COUMARATE--COA-LIGASE-RXN]]
+
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD0-1028]][c] '''+''' 1 [[PPI]][c]
−
* [[CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN]]
+
== Gene(s) associated with this reaction  ==
−
* [[RXN-1101]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[RXN-1102]]
+
* Gene: [[SJ10418]]
−
* [[RXN-1106]]
+
** Category: [[orthology]]
−
* [[RXN-1125]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* [[RXN-1143]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
== Reaction(s) not found ==
+
* Gene: [[SJ03479]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2602 RXN-2602]
+
** Category: [[orthology]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2581 RXN-2581]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1142 RXN-1142]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2621 RXN-2621]
+
* Gene: [[SJ18388]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2622 RXN-2622]
+
** Category: [[orthology]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.133-RXN 2.3.1.133-RXN]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.36-RXN 1.14.13.36-RXN]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2601 RXN-2601]
+
* Gene: [[SJ04442]]
−
{{#set: taxonomic-range=tax-58024}}
+
** Category: [[orthology]]
−
{{#set: common-name=phenylpropanoid biosynthesis}}
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
{{#set: nb reaction found=7}}
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
{{#set: completion rate=0.47}}
+
* Gene: [[SJ10781]]
−
{{#set: nb total reaction=15}}
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19255]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 +
== Pathway(s)  ==
 +
* [[PWY-5815]], rubber biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
== External links  ==
 +
* METANETX-RXN : MNXR109677
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31282 31282]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05555 R05555]
 +
{{#set: direction=left-to-right}}
 +
{{#set: ec-number=ec-2.5.1}}
 +
{{#set: nb gene associated=6}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN0-5180

  • direction:
    • left-to-right
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5815, rubber biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR109677
  • RHEA:
  • LIGAND-RXN:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN0-5180&oldid=142236"