Difference between revisions of "RXN0-5289"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEHYDDEOXPHOSGALACT-ALDOL-RXN DEHYDDEOXPHOSGALACT-ALDOL-RXN] == * direction: ** reversible * common...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15212 RXN-15212] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEHYDDEOXPHOSGALACT-ALDOL-RXN DEHYDDEOXPHOSGALACT-ALDOL-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15212 RXN-15212] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** 2-oxo-3-deoxygalactonate 6-phosphate aldolase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
+
** [http://enzyme.expasy.org/EC/3.1.4.12 ec-3.1.4.12]
−
** [http://enzyme.expasy.org/EC/4.1.2.21 ec-4.1.2.21]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DEHYDRO-DEOXY-GALACTONATE-PHOSPHATE]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[N-acyl-sphingosylphosphorylcholine]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[N-Acylsphingosine]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03464]]
+
* Gene: [[SJ16608]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16609]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7130]], L-glucose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7130 PWY-7130]
+
* [[PWY3DJ-11281]], sphingomyelin metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-11281 PWY3DJ-11281]
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[GALACTCAT-PWY]], D-galactonate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GALACTCAT-PWY GALACTCAT-PWY]
+
* [[PWY-7277]], sphingolipid biosynthesis (mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7277 PWY-7277]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24467 24467]
+
{{#set: ec-number=ec-3.1.4.12}}
−
* LIGAND-RXN:
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{{#set: nb gene associated=2}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01064 R01064]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=2-oxo-3-deoxygalactonate 6-phosphate aldolase}}
 
−
{{#set: ec-number=ec-4.1.2.55|ec-4.1.2.21}}
 
−
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction RXN-15212

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY3DJ-11281, sphingomyelin metabolism: PWY3DJ-11281
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7277, sphingolipid biosynthesis (mammals): PWY-7277
    • 4 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN0-5289&oldid=36017"