Difference between revisions of "RXN0-5398"

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(Created page with "Category:reaction == Reaction GALACTURIDYLYLTRANS-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.12 ec-2.7.7.12] == Reaction formula...")
(Created page with "Category:reaction == Reaction RXN0-5398 == * direction: ** reversible * common-name: ** pseudouridine-5'-phosphate glycosidase * ec-number: ** [http://enzyme.expasy.org/EC...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GALACTURIDYLYLTRANS-RXN ==
+
== Reaction RXN0-5398 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 +
* common-name:
 +
** pseudouridine-5'-phosphate glycosidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.12 ec-2.7.7.12]
+
** [http://enzyme.expasy.org/EC/4.2.1.70 ec-4.2.1.70]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12575]][c] '''+''' 1 [[GALACTOSE-1P]][c] '''<=>''' 1 [[CPD-14553]][c] '''+''' 1 [[GLC-1-P]][c]
+
* 1 [[CPD-15317]][c] '''+''' 1 [[URACIL]][c] '''<=>''' 1 [[PSEUDOURIDINE-5-P]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12257]]
+
* Gene: [[SJ04700]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6527]], stachyose degradation:
+
* [[PWY-6019]], pseudouridine degradation:
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY66-422]]:
 
−
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR143436
+
* METANETX-RXN : MNXR141222
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13992 13992]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18340 18340]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JWF1 Q9JWF1]
 +
** [http://www.uniprot.org/uniprot/Q9JTX5 Q9JTX5]
 +
** [http://www.uniprot.org/uniprot/Q9PPJ9 Q9PPJ9]
 +
** [http://www.uniprot.org/uniprot/Q9CGH0 Q9CGH0]
 +
** [http://www.uniprot.org/uniprot/Q9CI80 Q9CI80]
 +
** [http://www.uniprot.org/uniprot/Q9JX44 Q9JX44]
 +
** [http://www.uniprot.org/uniprot/Q9V1A5 Q9V1A5]
 +
** [http://www.uniprot.org/uniprot/Q9PP96 Q9PP96]
 +
** [http://www.uniprot.org/uniprot/Q9PN18 Q9PN18]
 +
** [http://www.uniprot.org/uniprot/Q9PJ89 Q9PJ89]
 +
** [http://www.uniprot.org/uniprot/Q9PNJ2 Q9PNJ2]
 +
** [http://www.uniprot.org/uniprot/Q9PLW9 Q9PLW9]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00955 R00955]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01055 R01055]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P43424 P43424]
 
−
** [http://www.uniprot.org/uniprot/P31764 P31764]
 
−
** [http://www.uniprot.org/uniprot/P07902 P07902]
 
−
** [http://www.uniprot.org/uniprot/P08431 P08431]
 
−
** [http://www.uniprot.org/uniprot/P09148 P09148]
 
−
** [http://www.uniprot.org/uniprot/P13212 P13212]
 
−
** [http://www.uniprot.org/uniprot/P09580 P09580]
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: ec-number=ec-2.7.7.12}}
+
{{#set: common-name=pseudouridine-5'-phosphate glycosidase}}
 +
{{#set: ec-number=ec-4.2.1.70}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN0-5398

  • direction:
    • reversible
  • common-name:
    • pseudouridine-5'-phosphate glycosidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6019, pseudouridine degradation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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