Difference between revisions of "RXN0-6382"

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(Created page with "Category:reaction == Reaction RXN1F-10 == * direction: ** left-to-right * common-name: ** protochlorophyllide oxidoreductase * ec-number: ** [http://enzyme.expasy.org/EC/1...")
(Created page with "Category:reaction == Reaction CHOLINE-KINASE-RXN == * direction: ** left-to-right * common-name: ** choline kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.32 ec...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN1F-10 ==
+
== Reaction CHOLINE-KINASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** protochlorophyllide oxidoreductase
+
** choline kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.1.33 ec-1.3.1.33]
+
** [http://enzyme.expasy.org/EC/2.7.1.32 ec-2.7.1.32]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Light]][c] '''+''' 1 [[MONO-VINYL-PROTOCHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CHOLINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12355]]
+
* Gene: [[SJ18340]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ09091]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15347]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7782]], plasmalogen biosynthesis:
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY3O-450]], phosphatidylcholine biosynthesis I:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7818]], type IV lipoteichoic acid biosynthesis (S. pneumoniae):
 +
** '''2''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-7886]], cell-surface glycoconjugate-linked phosphocholine biosynthesis:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11132 11132]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12838 12838]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03845 R03845]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01021 R01021]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q3J1A0 Q3J1A0]
+
** [http://www.uniprot.org/uniprot/P20485 P20485]
−
** [http://www.uniprot.org/uniprot/Q02432 Q02432]
+
** [http://www.uniprot.org/uniprot/Q01134 Q01134]
−
** [http://www.uniprot.org/uniprot/Q9RFD4 Q9RFD4]
+
** [http://www.uniprot.org/uniprot/Q42809 Q42809]
−
** [http://www.uniprot.org/uniprot/Q9Z5D9 Q9Z5D9]
+
** [http://www.uniprot.org/uniprot/Q42810 Q42810]
−
** [http://www.uniprot.org/uniprot/Q9RFD6 Q9RFD6]
+
** [http://www.uniprot.org/uniprot/Q42811 Q42811]
−
** [http://www.uniprot.org/uniprot/O66148 O66148]
 
−
** [http://www.uniprot.org/uniprot/Q9ZGE9 Q9ZGE9]
 
−
** [http://www.uniprot.org/uniprot/Q9ZGF0 Q9ZGF0]
 
−
** [http://www.uniprot.org/uniprot/P21218 P21218]
 
−
** [http://www.uniprot.org/uniprot/P41646 P41646]
 
−
** [http://www.uniprot.org/uniprot/P56303 P56303]
 
−
** [http://www.uniprot.org/uniprot/P56302 P56302]
 
−
** [http://www.uniprot.org/uniprot/P48100 P48100]
 
−
** [http://www.uniprot.org/uniprot/P48110 P48110]
 
−
** [http://www.uniprot.org/uniprot/P48099 P48099]
 
−
** [http://www.uniprot.org/uniprot/O48741 O48741]
 
−
** [http://www.uniprot.org/uniprot/P73480 P73480]
 
−
** [http://www.uniprot.org/uniprot/Q55607 Q55607]
 
−
** [http://www.uniprot.org/uniprot/P51278 P51278]
 
−
** [http://www.uniprot.org/uniprot/P51188 P51188]
 
−
** [http://www.uniprot.org/uniprot/P51187 P51187]
 
−
** [http://www.uniprot.org/uniprot/Q39617 Q39617]
 
−
** [http://www.uniprot.org/uniprot/P56291 P56291]
 
−
** [http://www.uniprot.org/uniprot/Q7M189 Q7M189]
 
−
** [http://www.uniprot.org/uniprot/P36208 P36208]
 
−
** [http://www.uniprot.org/uniprot/P36437 P36437]
 
−
** [http://www.uniprot.org/uniprot/Q41578 Q41578]
 
−
** [http://www.uniprot.org/uniprot/Q04607 Q04607]
 
−
** [http://www.uniprot.org/uniprot/Q02431 Q02431]
 
−
** [http://www.uniprot.org/uniprot/O22597 O22597]
 
−
** [http://www.uniprot.org/uniprot/Q00864 Q00864]
 
−
** [http://www.uniprot.org/uniprot/P29683 P29683]
 
−
** [http://www.uniprot.org/uniprot/P26177 P26177]
 
−
** [http://www.uniprot.org/uniprot/P26180 P26180]
 
−
** [http://www.uniprot.org/uniprot/P17652 P17652]
 
−
** [http://www.uniprot.org/uniprot/P15904 P15904]
 
−
** [http://www.uniprot.org/uniprot/P13653 P13653]
 
−
** [http://www.uniprot.org/uniprot/P26156 P26156]
 
−
** [http://www.uniprot.org/uniprot/P28372 P28372]
 
−
** [http://www.uniprot.org/uniprot/Q41249 Q41249]
 
−
** [http://www.uniprot.org/uniprot/P26179 P26179]
 
−
** [http://www.uniprot.org/uniprot/P26163 P26163]
 
−
** [http://www.uniprot.org/uniprot/P26178 P26178]
 
−
** [http://www.uniprot.org/uniprot/P26164 P26164]
 
−
** [http://www.uniprot.org/uniprot/P26237 P26237]
 
−
** [http://www.uniprot.org/uniprot/P26238 P26238]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=protochlorophyllide oxidoreductase}}
+
{{#set: common-name=choline kinase}}
−
{{#set: ec-number=ec-1.3.1.33}}
+
{{#set: ec-number=ec-2.7.1.32}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:14, 14 January 2021

Reaction CHOLINE-KINASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • choline kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7782, plasmalogen biosynthesis:
    • 11 reactions found over 16 reactions in the full pathway
  • PWY3O-450, phosphatidylcholine biosynthesis I:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7818, type IV lipoteichoic acid biosynthesis (S. pneumoniae):
    • 2 reactions found over 19 reactions in the full pathway
  • PWY-7886, cell-surface glycoconjugate-linked phosphocholine biosynthesis:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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