Difference between revisions of "RXN0-6427"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] == * direction: ** left-to-right * common-name: ** acyl-coa synthetase ** long-c...")
 
(Created page with "Category:reaction == Reaction RXN0-6427 == * direction: ** left-to-right * common-name: ** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase ** guanosine 3'-diphosphate 5'...")
 
(9 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] ==
+
== Reaction RXN0-6427 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** acyl-coa synthetase
+
** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
−
** long-chain fatty acid-coa ligase
+
** guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/3.1.7.2 ec-3.1.7.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Long-Chain-Acyl-CoAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[GDP-TP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GTP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ10100]]
−
* Gene: [[SJ05591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03650]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ13961]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08691]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ14690]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08690]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ08692]]
+
* Gene: [[SJ07200]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ13972]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6803]], phosphatidylcholine acyl editing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6803 PWY-6803]
+
* [[PPGPPMET-PWY]], ppGpp metabolism:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-6873]], long chain fatty acid ester synthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6873 PWY-6873]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7033]], alkane biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7033 PWY-7033]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR100094
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15422 15422]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33056 33056]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O60135 O60135]
 
−
** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
 
−
** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
 
−
** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
 
−
** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
 
−
** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
 
−
** [http://www.uniprot.org/uniprot/Q96338 Q96338]
 
−
** [http://www.uniprot.org/uniprot/Q96538 Q96538]
 
−
** [http://www.uniprot.org/uniprot/Q96537 Q96537]
 
−
** [http://www.uniprot.org/uniprot/O15840 O15840]
 
−
** [http://www.uniprot.org/uniprot/O81614 O81614]
 
−
** [http://www.uniprot.org/uniprot/P73004 P73004]
 
−
** [http://www.uniprot.org/uniprot/P47912 P47912]
 
−
** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
 
−
** [http://www.uniprot.org/uniprot/P69452 P69452]
 
−
** [http://www.uniprot.org/uniprot/P69451 P69451]
 
−
** [http://www.uniprot.org/uniprot/Q02602 Q02602]
 
−
** [http://www.uniprot.org/uniprot/P30624 P30624]
 
−
** [http://www.uniprot.org/uniprot/P33124 P33124]
 
−
** [http://www.uniprot.org/uniprot/P33121 P33121]
 
−
** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
 
−
** [http://www.uniprot.org/uniprot/O51539 O51539]
 
−
** [http://www.uniprot.org/uniprot/O30039 O30039]
 
−
** [http://www.uniprot.org/uniprot/P44446 P44446]
 
−
** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
 
−
** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
 
−
** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
 
−
** [http://www.uniprot.org/uniprot/P94547 P94547]
 
−
** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
 
−
** [http://www.uniprot.org/uniprot/O83181 O83181]
 
−
** [http://www.uniprot.org/uniprot/Q10776 Q10776]
 
−
** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
 
−
** [http://www.uniprot.org/uniprot/P39002 P39002]
 
−
** [http://www.uniprot.org/uniprot/O51162 O51162]
 
−
** [http://www.uniprot.org/uniprot/P39518 P39518]
 
−
** [http://www.uniprot.org/uniprot/P18163 P18163]
 
−
* PIR:
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54901 A54901]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A70117 A70117]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54901 B54901]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B75585 B75585]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C70762 C70762]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71361 C71361]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C75364 C75364]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69649 D69649]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D72605 D72605]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86707 F86707]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81798 G81798]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64041 H64041]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H69274 H69274]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70173 H70173]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81068 H81068]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JE0262 JE0262]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0202 JX0202]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0205 JX0205]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23052 S23052]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23467 S23467]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41589 S41589]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49487 S49487]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56060 S56060]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74984 S74984]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T01875 T01875]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02834 T02834]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07928 T07928]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07929 T07929]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07944 T07944]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08182 T08182]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08904 T08904]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T34994 T34994]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35430 T35430]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=long-chain fatty acid-coa ligase|acyl-coa synthetase}}
+
{{#set: common-name=guanosine-3',5'-bis(diphosphate) 3'-diphosphatase|guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase}}
−
{{#set: ec-number=ec-6.2.1.3}}
+
{{#set: ec-number=ec-3.1.7.2}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction RXN0-6427

  • direction:
    • left-to-right
  • common-name:
    • guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
    • guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PPGPPMET-PWY, ppGpp metabolism:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR100094
  • RHEA:





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