Difference between revisions of "RXN0-6479"

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(Created page with "Category:reaction == Reaction RXN-4021 == * direction: ** left-to-right * common-name: ** sterol methyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.41 ec...")
(Created page with "Category:reaction == Reaction 35-CYCLIC-GMP-PHOSPHODIESTERASE-RXN == * direction: ** left-to-right * common-name: ** 3',5'-cyclic-gmp phosphodiesterase * ec-number: ** [ht...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-4021 ==
+
== Reaction 35-CYCLIC-GMP-PHOSPHODIESTERASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** sterol methyltransferase
+
** 3',5'-cyclic-gmp phosphodiesterase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.41 ec-2.1.1.41]
+
** [http://enzyme.expasy.org/EC/3.1.4.35 ec-3.1.4.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CYCLOARTENOL]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CPD-696]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CGMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GMP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09766]]
+
* Gene: [[SJ18680]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ14526]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ05905]]
+
* Gene: [[SJ09726]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ14722]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08167]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2541]], phytosterol biosynthesis (plants):
 
−
** '''11''' reactions found over '''35''' reactions in the full pathway
 
−
* [[PWY-7155]], 7-dehydroporiferasterol biosynthesis:
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16958 16958]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07481 R07481]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01234 R01234]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P04972 P04972]
 +
** [http://www.uniprot.org/uniprot/P16586 P16586]
 +
** [http://www.uniprot.org/uniprot/P23439 P23439]
 +
** [http://www.uniprot.org/uniprot/P35913 P35913]
 +
** [http://www.uniprot.org/uniprot/P33726 P33726]
 +
** [http://www.uniprot.org/uniprot/P09174 P09174]
 +
** [http://www.uniprot.org/uniprot/P52731 P52731]
 +
** [http://www.uniprot.org/uniprot/P51160 P51160]
 +
** [http://www.uniprot.org/uniprot/P18545 P18545]
 +
** [http://www.uniprot.org/uniprot/O76074 O76074]
 +
** [http://www.uniprot.org/uniprot/P11541 P11541]
 +
** [http://www.uniprot.org/uniprot/P27664 P27664]
 +
** [http://www.uniprot.org/uniprot/Q62037 Q62037]
 +
** [http://www.uniprot.org/uniprot/P23440 P23440]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=sterol methyltransferase}}
+
{{#set: common-name=3',5'-cyclic-gmp phosphodiesterase}}
−
{{#set: ec-number=ec-2.1.1.41}}
+
{{#set: ec-number=ec-3.1.4.35}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:06, 5 January 2021

Reaction 35-CYCLIC-GMP-PHOSPHODIESTERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 3',5'-cyclic-gmp phosphodiesterase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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