Difference between revisions of "RXN0-6554"

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(Created page with "Category:reaction == Reaction UREASE-RXN == * direction: ** reversible * common-name: ** urease * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.5 ec-3.5.1.5] == Reactio...")
(Created page with "Category:reaction == Reaction RXN-15125 == * direction: ** left-to-right * common-name: ** l-serine ammonia-lyase == Reaction formula == * 1 SER[c] '''=>''' 1 2-AMIN...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UREASE-RXN ==
+
== Reaction RXN-15125 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** urease
+
** l-serine ammonia-lyase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/3.5.1.5 ec-3.5.1.5]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[PROTON]][c] '''+''' 1 [[UREA]][c] '''+''' 1 [[WATER]][c] '''<=>''' 2 [[AMMONIUM]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[SER]][c] '''=>''' 1 [[2-AMINOACRYLATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05942]]
+
* Gene: [[SJ08066]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15468]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5704]], urea degradation II:
+
* [[SERDEG-PWY]], L-serine degradation:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-3661]], glycine betaine degradation I:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* RHEA:
−
* LIGAND-RXN:
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=40664 40664]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00131 R00131]
+
{{#set: direction=left-to-right}}
−
* UNIPROT:
+
{{#set: common-name=l-serine ammonia-lyase}}
−
** [http://www.uniprot.org/uniprot/P17337 P17337]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P18316 P18316]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/Q07399 Q07399]
 
−
** [http://www.uniprot.org/uniprot/P44393 P44393]
 
−
** [http://www.uniprot.org/uniprot/P17338 P17338]
 
−
** [http://www.uniprot.org/uniprot/Q07398 Q07398]
 
−
** [http://www.uniprot.org/uniprot/P17088 P17088]
 
−
** [http://www.uniprot.org/uniprot/Q03282 Q03282]
 
−
** [http://www.uniprot.org/uniprot/Q9R5F8 Q9R5F8]
 
−
** [http://www.uniprot.org/uniprot/P17339 P17339]
 
−
** [http://www.uniprot.org/uniprot/Q07397 Q07397]
 
−
** [http://www.uniprot.org/uniprot/P17087 P17087]
 
−
** [http://www.uniprot.org/uniprot/Q08716 Q08716]
 
−
** [http://www.uniprot.org/uniprot/P17086 P17086]
 
−
** [http://www.uniprot.org/uniprot/Q9R2X6 Q9R2X6]
 
−
** [http://www.uniprot.org/uniprot/Q9R5F6 Q9R5F6]
 
−
** [http://www.uniprot.org/uniprot/Q9R5F5 Q9R5F5]
 
−
** [http://www.uniprot.org/uniprot/Q9R5F4 Q9R5F4]
 
−
** [http://www.uniprot.org/uniprot/P44391 P44391]
 
−
** [http://www.uniprot.org/uniprot/P44392 P44392]
 
−
** [http://www.uniprot.org/uniprot/P16124 P16124]
 
−
** [http://www.uniprot.org/uniprot/P16123 P16123]
 
−
** [http://www.uniprot.org/uniprot/P16122 P16122]
 
−
** [http://www.uniprot.org/uniprot/P17274 P17274]
 
−
** [http://www.uniprot.org/uniprot/P17273 P17273]
 
−
** [http://www.uniprot.org/uniprot/P17272 P17272]
 
−
** [http://www.uniprot.org/uniprot/P31496 P31496]
 
−
** [http://www.uniprot.org/uniprot/Q08715 Q08715]
 
−
** [http://www.uniprot.org/uniprot/P31494 P31494]
 
−
** [http://www.uniprot.org/uniprot/P42875 P42875]
 
−
** [http://www.uniprot.org/uniprot/P42874 P42874]
 
−
** [http://www.uniprot.org/uniprot/P42873 P42873]
 
−
** [http://www.uniprot.org/uniprot/Q9R5X1 Q9R5X1]
 
−
** [http://www.uniprot.org/uniprot/Q41214 Q41214]
 
−
** [http://www.uniprot.org/uniprot/P42887 P42887]
 
−
** [http://www.uniprot.org/uniprot/P42886 P42886]
 
−
** [http://www.uniprot.org/uniprot/P42885 P42885]
 
−
** [http://www.uniprot.org/uniprot/P41022 P41022]
 
−
** [http://www.uniprot.org/uniprot/P41021 P41021]
 
−
** [http://www.uniprot.org/uniprot/P41020 P41020]
 
−
** [http://www.uniprot.org/uniprot/P73796 P73796]
 
−
** [http://www.uniprot.org/uniprot/P73061 P73061]
 
−
** [http://www.uniprot.org/uniprot/P08298 P08298]
 
−
** [http://www.uniprot.org/uniprot/O86508 O86508]
 
−
** [http://www.uniprot.org/uniprot/O00084 O00084]
 
−
** [http://www.uniprot.org/uniprot/Q9RFF5 Q9RFF5]
 
−
** [http://www.uniprot.org/uniprot/Q9RFF4 Q9RFF4]
 
−
** [http://www.uniprot.org/uniprot/Q9RFF2 Q9RFF2]
 
−
** [http://www.uniprot.org/uniprot/P07374 P07374]
 
−
** [http://www.uniprot.org/uniprot/P14916 P14916]
 
−
** [http://www.uniprot.org/uniprot/P69996 P69996]
 
−
** [http://www.uniprot.org/uniprot/P69997 P69997]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=urease}}
 
−
{{#set: ec-number=ec-3.5.1.5}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:20, 15 January 2021

Reaction RXN-15125

  • direction:
    • left-to-right
  • common-name:
    • l-serine ammonia-lyase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • SERDEG-PWY, L-serine degradation:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-3661, glycine betaine degradation I:
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 10 reactions found over 24 reactions in the full pathway

Reconstruction information

External links





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