Difference between revisions of "RXN0-6725"

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(Created page with "Category:reaction == Reaction GLYOHMETRANS-RXN == * direction: ** reversible * common-name: ** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase * ec-number:...")
(Created page with "Category:reaction == Reaction RXN-14116 == * direction: ** left-to-right * common-name: ** 1-pyrroline-5-carboxylate dehydrogenase * ec-number: ** [http://enzyme.expasy.or...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYOHMETRANS-RXN ==
+
== Reaction RXN-14116 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
+
** 1-pyrroline-5-carboxylate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.1 ec-2.1.2.1]
+
** [http://enzyme.expasy.org/EC/1.2.1.88 ec-1.2.1.88]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[SER]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03668]]
+
* Gene: [[SJ10107]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15530]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway):
−
* [[1CMET2-PWY]], folate transformations III (E. coli):
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-6853]], ethene biosynthesis II (microbes):
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
** '''10''' reactions found over '''24''' reactions in the full pathway
+
* [[PROUT-PWY]], L-proline degradation I:
−
* [[PWY-181]], photorespiration:
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3661]], glycine betaine degradation I:
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLYSYN-PWY]], glycine biosynthesis I:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-3661-1]], glycine betaine degradation II (mammalian):
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-2161]], folate polyglutamylation:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR103352
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00245 R00245]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15484 15484]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30236 30236]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
+
{{#set: common-name=1-pyrroline-5-carboxylate dehydrogenase}}
−
* UNIPROT:
+
{{#set: ec-number=ec-1.2.1.88}}
−
** [http://www.uniprot.org/uniprot/P35623 P35623]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P34898 P34898]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/P34899 P34899]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P34896 P34896]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7]
 
−
** [http://www.uniprot.org/uniprot/P34897 P34897]
 
−
** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1]
 
−
** [http://www.uniprot.org/uniprot/O23254 O23254]
 
−
** [http://www.uniprot.org/uniprot/O53441 O53441]
 
−
** [http://www.uniprot.org/uniprot/O08370 O08370]
 
−
** [http://www.uniprot.org/uniprot/P43844 P43844]
 
−
** [http://www.uniprot.org/uniprot/Q58992 Q58992]
 
−
** [http://www.uniprot.org/uniprot/O66776 O66776]
 
−
** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7]
 
−
** [http://www.uniprot.org/uniprot/P47634 P47634]
 
−
** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9]
 
−
** [http://www.uniprot.org/uniprot/P56089 P56089]
 
−
** [http://www.uniprot.org/uniprot/O53615 O53615]
 
−
** [http://www.uniprot.org/uniprot/O83349 O83349]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7]
 
−
** [http://www.uniprot.org/uniprot/O51547 O51547]
 
−
** [http://www.uniprot.org/uniprot/O84439 O84439]
 
−
** [http://www.uniprot.org/uniprot/P24531 P24531]
 
−
** [http://www.uniprot.org/uniprot/P39148 P39148]
 
−
** [http://www.uniprot.org/uniprot/P24060 P24060]
 
−
** [http://www.uniprot.org/uniprot/P37292 P37292]
 
−
** [http://www.uniprot.org/uniprot/P34895 P34895]
 
−
** [http://www.uniprot.org/uniprot/P34894 P34894]
 
−
** [http://www.uniprot.org/uniprot/P49357 P49357]
 
−
** [http://www.uniprot.org/uniprot/P49358 P49358]
 
−
** [http://www.uniprot.org/uniprot/P50433 P50433]
 
−
** [http://www.uniprot.org/uniprot/P37291 P37291]
 
−
** [http://www.uniprot.org/uniprot/P78011 P78011]
 
−
** [http://www.uniprot.org/uniprot/P77962 P77962]
 
−
** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4]
 
−
** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0]
 
−
** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5]
 
−
** [http://www.uniprot.org/uniprot/O23984 O23984]
 
−
** [http://www.uniprot.org/uniprot/P0A825 P0A825]
 
−
** [http://www.uniprot.org/uniprot/P07511 P07511]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase}}
 
−
{{#set: ec-number=ec-2.1.2.1}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=10}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 08:39, 15 March 2021

Reaction RXN-14116

  • direction:
    • left-to-right
  • common-name:
    • 1-pyrroline-5-carboxylate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ARGASEDEG-PWY, L-arginine degradation I (arginase pathway):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6853, ethene biosynthesis II (microbes):
    • 1 reactions found over 5 reactions in the full pathway
  • PROUT-PWY, L-proline degradation I:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR103352
  • LIGAND-RXN:
  • RHEA:





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