Difference between revisions of "RXN0-6975"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] == * direction: ** left-to-right * common-name: ** prephytoene diphospha...")
(Created page with "Category:reaction == Reaction PANTOATE-BETA-ALANINE-LIG-RXN == * direction: ** left-to-right * common-name: ** pantothenate synthetase * ec-number: ** [http://enzyme.expas...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] ==
+
== Reaction PANTOATE-BETA-ALANINE-LIG-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** prephytoene diphosphate synthase
+
** pantothenate synthetase
−
* synonymous:
+
* ec-number:
−
** geranylgeranyl-diphosphate geranylgeranyltransferase
+
** [http://enzyme.expasy.org/EC/6.3.2.1 ec-6.3.2.1]
−
** psase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[B-ALANINE]][c] '''+''' 1 [[L-PANTOATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PANTOTHENATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02885]]
+
* Gene: [[SJ13797]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7943]], lycopadiene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7943 PWY-7943]
+
* [[PANTO-PWY]], phosphopantothenate biosynthesis I:
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10913 10913]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02473 R02473]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P53609 P53609]
+
** [http://www.uniprot.org/uniprot/P31663 P31663]
−
** [http://www.uniprot.org/uniprot/P37295 P37295]
+
** [http://www.uniprot.org/uniprot/Q9PIK2 Q9PIK2]
−
** [http://www.uniprot.org/uniprot/P22872 P22872]
+
** [http://www.uniprot.org/uniprot/P56061 P56061]
−
** [http://www.uniprot.org/uniprot/P53610 P53610]
+
** [http://www.uniprot.org/uniprot/P57035 P57035]
−
** [http://www.uniprot.org/uniprot/P53612 P53612]
+
** [http://www.uniprot.org/uniprot/Q9ZN52 Q9ZN52]
−
** [http://www.uniprot.org/uniprot/P17056 P17056]
+
** [http://www.uniprot.org/uniprot/Q09673 Q09673]
−
** [http://www.uniprot.org/uniprot/P49293 P49293]
+
** [http://www.uniprot.org/uniprot/O24210 O24210]
 +
** [http://www.uniprot.org/uniprot/Q9X713 Q9X713]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=prephytoene diphosphate synthase}}
+
{{#set: common-name=pantothenate synthetase}}
−
{{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|psase}}
+
{{#set: ec-number=ec-6.3.2.1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:39, 18 December 2020

Reaction PANTOATE-BETA-ALANINE-LIG-RXN

  • direction:
    • left-to-right
  • common-name:
    • pantothenate synthetase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PANTO-PWY, phosphopantothenate biosynthesis I:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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