Difference between revisions of "RXN0-6975"

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(Created page with "Category:reaction == Reaction ExchangeSeed-EDTA == * direction: ** reversible == Reaction formula == * 1.0 EDTA[C-BOUNDARY] '''<=>''' 1.0 EDTA[e] == Gene(s) associ...")
(Created page with "Category:reaction == Reaction HISTIDINE-DECARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** histidine decarboxylase * ec-number: ** [http://enzyme.expasy....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-EDTA ==
+
== Reaction HISTIDINE-DECARBOXYLASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** histidine decarboxylase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.1.1.22 ec-4.1.1.22]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[EDTA]][C-BOUNDARY] '''<=>''' 1.0 [[EDTA]][e]
+
* 1 [[HIS]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[HISTAMINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ05388]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18752]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18746]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18751]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08395]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09232]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09099]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6173]], histamine biosynthesis:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* RHEA:
−
{{#set: nb gene associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20841 20841]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=manual}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01167 R01167]
−
{{#set: reconstruction tool=curation}}
+
* UNIPROT:
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
** [http://www.uniprot.org/uniprot/P05034 P05034]
−
{{#set: reconstruction source=import_from_medium}}
+
** [http://www.uniprot.org/uniprot/P16453 P16453]
 +
** [http://www.uniprot.org/uniprot/P28577 P28577]
 +
** [http://www.uniprot.org/uniprot/P19113 P19113]
 +
** [http://www.uniprot.org/uniprot/P28578 P28578]
 +
** [http://www.uniprot.org/uniprot/P04194 P04194]
 +
** [http://www.uniprot.org/uniprot/P04193 P04193]
 +
** [http://www.uniprot.org/uniprot/P00862 P00862]
 +
** [http://www.uniprot.org/uniprot/Q7M174 Q7M174]
 +
** [http://www.uniprot.org/uniprot/P23738 P23738]
 +
** [http://www.uniprot.org/uniprot/Q05733 Q05733]
 +
** [http://www.uniprot.org/uniprot/P54772 P54772]
 +
** [http://www.uniprot.org/uniprot/Q56581 Q56581]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=histidine decarboxylase}}
 +
{{#set: ec-number=ec-4.1.1.22}}
 +
{{#set: nb gene associated=7}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:14, 14 January 2021

Reaction HISTIDINE-DECARBOXYLASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • histidine decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6173, histamine biosynthesis:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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