Difference between revisions of "RXN0-722"

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(Created page with "Category:reaction == Reaction ISOLEUCINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** isoleucine-trna ligase * ec-number: ** [http://enzyme.expasy.o...")
(Created page with "Category:reaction == Reaction RXN0-722 == * direction: ** left-to-right * common-name: ** 2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreduc...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ISOLEUCINE--TRNA-LIGASE-RXN ==
+
== Reaction RXN0-722 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** isoleucine-trna ligase
+
** 2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase
 +
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.5 ec-6.1.1.5]
+
** [http://enzyme.expasy.org/EC/1.17.4.1 ec-1.17.4.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[ILE]][c] '''+''' 1 [[ILE-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ILE-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[Reduced-NrdH-Proteins]][c] '''+''' 1 [[UDP]][c] '''=>''' 1 [[DUDP]][c] '''+''' 1 [[Oxidized-NrdH-Proteins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03174]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ21120]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16361]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03698]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21121]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17066]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18284]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03173]]
+
* Gene: [[SJ14458]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20794]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03697]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16809]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''14''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR123400
−
* METANETX-RXN : MNXR115986
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11061 11061]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03656 R03656]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P18330 P18330]
 
−
** [http://www.uniprot.org/uniprot/P36422 P36422]
 
−
** [http://www.uniprot.org/uniprot/O29622 O29622]
 
−
** [http://www.uniprot.org/uniprot/P47587 P47587]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCU4 Q9ZCU4]
 
−
** [http://www.uniprot.org/uniprot/P46213 P46213]
 
−
** [http://www.uniprot.org/uniprot/P41257 P41257]
 
−
** [http://www.uniprot.org/uniprot/Q9JVY4 Q9JVY4]
 
−
** [http://www.uniprot.org/uniprot/Q58357 Q58357]
 
−
** [http://www.uniprot.org/uniprot/O83466 O83466]
 
−
** [http://www.uniprot.org/uniprot/Q9Z972 Q9Z972]
 
−
** [http://www.uniprot.org/uniprot/P56456 P56456]
 
−
** [http://www.uniprot.org/uniprot/O58792 O58792]
 
−
** [http://www.uniprot.org/uniprot/O84022 O84022]
 
−
** [http://www.uniprot.org/uniprot/Q9ZJJ1 Q9ZJJ1]
 
−
** [http://www.uniprot.org/uniprot/O66651 O66651]
 
−
** [http://www.uniprot.org/uniprot/Q9CEH8 Q9CEH8]
 
−
** [http://www.uniprot.org/uniprot/O27428 O27428]
 
−
** [http://www.uniprot.org/uniprot/Q45477 Q45477]
 
−
** [http://www.uniprot.org/uniprot/O51773 O51773]
 
−
** [http://www.uniprot.org/uniprot/P46207 P46207]
 
−
** [http://www.uniprot.org/uniprot/P41252 P41252]
 
−
** [http://www.uniprot.org/uniprot/P41972 P41972]
 
−
** [http://www.uniprot.org/uniprot/P48526 P48526]
 
−
** [http://www.uniprot.org/uniprot/P75258 P75258]
 
−
** [http://www.uniprot.org/uniprot/P73505 P73505]
 
−
** [http://www.uniprot.org/uniprot/Q49024 Q49024]
 
−
** [http://www.uniprot.org/uniprot/Q49074 Q49074]
 
−
** [http://www.uniprot.org/uniprot/P43824 P43824]
 
−
** [http://www.uniprot.org/uniprot/P09436 P09436]
 
−
** [http://www.uniprot.org/uniprot/P00956 P00956]
 
−
** [http://www.uniprot.org/uniprot/Q94425 Q94425]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=isoleucine-trna ligase}}
+
{{#set: common-name=2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase|ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
−
{{#set: ec-number=ec-6.1.1.5}}
+
{{#set: ec-number=ec-1.17.4.1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=9}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN0-722

  • direction:
    • left-to-right
  • common-name:
    • 2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase
    • ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 14 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123400





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