Difference between revisions of "RXN0-7238"

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(Created page with "Category:reaction == Reaction RXN-12107 == * direction: ** left-to-right * common-name: ** l-idonate 5-dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.366...")
(Created page with "Category:reaction == Reaction ACYLCOADEHYDROG-RXN == * direction: ** left-to-right * common-name: ** acyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12107 ==
+
== Reaction ACYLCOADEHYDROG-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** l-idonate 5-dehydrogenase
+
** acyl-coa dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.366 ec-1.1.1.366]
+
** [http://enzyme.expasy.org/EC/1.3.8 ec-1.3.8]
 +
* synonymous:
 +
** long-chain acyl-coa dehydrogenase
 +
** fatty acyl coenzyme a dehydrogenase
 +
** fatty-acyl-coa dehydrogenase
 +
** general acyl coa dehydrogenase
 +
** long-chain acyl coenzyme a dehydrogenase
 +
** medium-chain acyl-coenzyme a dehydrogenase
 +
** acyl coenzyme a dehydrogenase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-IDONATE]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[5-DEHYDROGLUCONATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14774]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ03090]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19669]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04334]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06456]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01215]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21233]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07451]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15262]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13468]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07241]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07909]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21703]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07452]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6704]], L-ascorbate degradation IV:
+
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21173 21173]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44705 44705]
−
* LIGAND-RXN:
+
* UNIPROT:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05683 R05683]
+
** [http://www.uniprot.org/uniprot/P16219 P16219]
 +
** [http://www.uniprot.org/uniprot/P45952 P45952]
 +
** [http://www.uniprot.org/uniprot/P15651 P15651]
 +
** [http://www.uniprot.org/uniprot/P11310 P11310]
 +
** [http://www.uniprot.org/uniprot/P08503 P08503]
 +
** [http://www.uniprot.org/uniprot/Q07417 Q07417]
 +
** [http://www.uniprot.org/uniprot/Q54857 Q54857]
 +
** [http://www.uniprot.org/uniprot/P45867 P45867]
 +
** [http://www.uniprot.org/uniprot/Q9X3R3 Q9X3R3]
 +
** [http://www.uniprot.org/uniprot/Q9R9I6 Q9R9I6]
 +
** [http://www.uniprot.org/uniprot/Q96329 Q96329]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=l-idonate 5-dehydrogenase}}
+
{{#set: common-name=acyl-coa dehydrogenase}}
−
{{#set: ec-number=ec-1.1.1.366}}
+
{{#set: ec-number=ec-1.3.8}}
−
{{#set: nb gene associated=1}}
+
{{#set: synonymous=acyl coenzyme a dehydrogenase|medium-chain acyl-coenzyme a dehydrogenase|fatty-acyl-coa dehydrogenase|general acyl coa dehydrogenase|long-chain acyl-coa dehydrogenase|fatty acyl coenzyme a dehydrogenase|long-chain acyl coenzyme a dehydrogenase}}
 +
{{#set: nb gene associated=14}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:02, 5 January 2021

Reaction ACYLCOADEHYDROG-RXN

  • direction:
    • left-to-right
  • common-name:
    • acyl-coa dehydrogenase
  • ec-number:
  • synonymous:
    • long-chain acyl-coa dehydrogenase
    • fatty acyl coenzyme a dehydrogenase
    • fatty-acyl-coa dehydrogenase
    • general acyl coa dehydrogenase
    • long-chain acyl coenzyme a dehydrogenase
    • medium-chain acyl-coenzyme a dehydrogenase
    • acyl coenzyme a dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • FAO-PWY, fatty acid β-oxidation I (generic):
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links






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