Difference between revisions of "RXN0-746"
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(Created page with "Category:reaction == Reaction RXN-16149 == * direction: ** left-to-right * common-name: ** ricinoleoyl-lipid 15-desaturase * ec-number: ** [http://enzyme.expasy.org/EC/1.1...") |
(Created page with "Category:reaction == Reaction HOMOCYSMET-RXN == * direction: ** reversible * common-name: ** cobalamin-independent homocysteine transmethylase * ec-number: ** [http://enzy...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction HOMOCYSMET-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** cobalamin-independent homocysteine transmethylase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1.14. | + | ** [http://enzyme.expasy.org/EC/2.1.1.14 ec-2.1.1.14] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[CPD- | + | * 1 [[CPD-1302]][c] '''+''' 1 [[HOMO-CYS]][c] '''<=>''' 1 [[CPD-1301]][c] '''+''' 1 [[MET]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ03226]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ10794]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-5041]], S-adenosyl-L-methionine cycle II: |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
+ | * [[HSERMETANA-PWY]], L-methionine biosynthesis III: | ||
+ | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6151]], S-adenosyl-L-methionine cycle I: | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-702]], L-methionine biosynthesis II (plants): | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | * RHEA: |
− | {{#set: common-name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21199 21199] |
− | {{#set: ec-number=ec-1.14 | + | * LIGAND-RXN: |
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R04405 R04405] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P25665 P25665] | ||
+ | ** [http://www.uniprot.org/uniprot/P45331 P45331] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PN94 Q9PN94] | ||
+ | ** [http://www.uniprot.org/uniprot/O26869 O26869] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUT6 Q9JUT6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CG55 Q9CG55] | ||
+ | ** [http://www.uniprot.org/uniprot/P05694 P05694] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42699 Q42699] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39586 Q39586] | ||
+ | ** [http://www.uniprot.org/uniprot/O48613 O48613] | ||
+ | ** [http://www.uniprot.org/uniprot/P93263 P93263] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UT19 Q9UT19] | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=cobalamin-independent homocysteine transmethylase}} | ||
+ | {{#set: ec-number=ec-2.1.1.14}} | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 19:00, 14 January 2021
Contents
Reaction HOMOCYSMET-RXN
- direction:
- reversible
- common-name:
- cobalamin-independent homocysteine transmethylase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ03226
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ10794
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5041, S-adenosyl-L-methionine cycle II:
- 3 reactions found over 4 reactions in the full pathway
- HSERMETANA-PWY, L-methionine biosynthesis III:
- 3 reactions found over 2 reactions in the full pathway
- HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
- 4 reactions found over 7 reactions in the full pathway
- PWY-6151, S-adenosyl-L-methionine cycle I:
- 3 reactions found over 4 reactions in the full pathway
- PWY-702, L-methionine biosynthesis II (plants):
- 5 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: