Difference between revisions of "RXN0-748"

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(Created page with "Category:reaction == Reaction RXN-8991 == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydratase ** (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylm...")
(Created page with "Category:reaction == Reaction RXN0-748 == * direction: ** left-to-right * common-name: ** 2'-deoxyguanosine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidored...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8991 ==
+
== Reaction RXN0-748 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-isopropylmalate dehydratase
+
** 2'-deoxyguanosine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase
−
** (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
+
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
−
* synonymous:
+
* ec-number:
−
** 3-isopropylmalate hydro-lyase
+
** [http://enzyme.expasy.org/EC/1.17.4.1 ec-1.17.4.1]
−
** β-isopropylmalate dehydratase
 
−
** α-isopropylmalate isomerase
 
−
** (2r,3s)-3-isopropylmalate hydro-lyase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[GDP]][c] '''+''' 1 [[Reduced-NrdH-Proteins]][c] '''=>''' 1 [[DGDP]][c] '''+''' 1 [[Oxidized-NrdH-Proteins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22396]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ17066]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21120]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ09771]]
+
* Gene: [[SJ03697]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20794]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16809]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14458]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03698]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18284]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21121]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
+
* [[PWY-7222]], guanosine deoxyribonucleotides de novo biosynthesis II:
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[LEUSYN-PWY]], L-leucine biosynthesis:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR100827
+
* METANETX-RXN : MNXR123416
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
+
{{#set: common-name=2'-deoxyguanosine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase|ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-1.17.4.1}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
+
{{#set: nb gene associated=9}}
−
{{#set: direction=reversible}}
+
{{#set: nb pathway associated=1}}
−
{{#set: common-name=(2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)|3-isopropylmalate dehydratase}}
 
−
{{#set: synonymous=(2r,3s)-3-isopropylmalate hydro-lyase|3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=2}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction RXN0-748

  • direction:
    • left-to-right
  • common-name:
    • 2'-deoxyguanosine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase
    • ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7222, guanosine deoxyribonucleotides de novo biosynthesis II:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123416





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