Difference between revisions of "RXN0-949"

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(Created page with "Category:reaction == Reaction FORMATETHFLIG-RXN == * direction: ** reversible * common-name: ** formate:tetrahydropteroylpolyglutamate ligase ** formate-tetrahydrofolate l...")
(Created page with "Category:reaction == Reaction R05819 == * direction: ** reversible * common-name: ** phycoerythrobilin:ferredoxin oxidoreductase == Reaction formula == * 1.0 1516-DIHYDR...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction FORMATETHFLIG-RXN ==
+
== Reaction R05819 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** formate:tetrahydropteroylpolyglutamate ligase
+
** phycoerythrobilin:ferredoxin oxidoreductase
−
** formate-tetrahydrofolate ligase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/6.3.4.3 ec-6.3.4.3]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[Pi]][c]
+
* 1.0 [[1516-DIHYDROBILIVERDIN]][h] '''+''' 1.0 [[Reduced-ferredoxins]][h] '''<=>''' 1.0 [[3Z-PHYCOERYTHROBILIN]][h] '''+''' 1.0 [[Oxidized-ferredoxins]][h]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12991]]
+
* Gene: [[SJ04581]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07523]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2161]], folate polyglutamylation:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20224 20224]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00943 R00943]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P09440 P09440]
 
−
** [http://www.uniprot.org/uniprot/P13419 P13419]
 
−
** [http://www.uniprot.org/uniprot/P07245 P07245]
 
−
** [http://www.uniprot.org/uniprot/P11586 P11586]
 
−
** [http://www.uniprot.org/uniprot/P21164 P21164]
 
−
** [http://www.uniprot.org/uniprot/P28723 P28723]
 
−
** [http://www.uniprot.org/uniprot/Q9JVY8 Q9JVY8]
 
−
** [http://www.uniprot.org/uniprot/Q9CH07 Q9CH07]
 
−
** [http://www.uniprot.org/uniprot/Q07064 Q07064]
 
−
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=formate-tetrahydrofolate ligase|formate:tetrahydropteroylpolyglutamate ligase}}
+
{{#set: common-name=phycoerythrobilin:ferredoxin oxidoreductase}}
−
{{#set: ec-number=ec-6.3.4.3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=5}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 11:21, 15 January 2021

Reaction R05819

  • direction:
    • reversible
  • common-name:
    • phycoerythrobilin:ferredoxin oxidoreductase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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