Difference between revisions of "RXN1A0-6303"

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(Created page with "Category:reaction == Reaction 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** 3-hydroxyisobutyrate dehydrogenase * ec-number: **...")
(Created page with "Category:reaction == Reaction 1.5.1.11-RXN == * direction: ** left-to-right * common-name: ** d-octopine dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.5.1.1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN ==
+
== Reaction 1.5.1.11-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-hydroxyisobutyrate dehydrogenase
+
** d-octopine dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.31 ec-1.1.1.31]
+
** [http://enzyme.expasy.org/EC/1.5.1.11 ec-1.5.1.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12175]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CH3-MALONATE-S-ALD]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ARG]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CPD-309]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14331]]
+
* Gene: [[SJ15888]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21390]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03584]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[VALDEG-PWY]], L-valine degradation I:
+
* [[PWY-7351]], pyruvate fermentation to opines:
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17682 17682]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16287 16287]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02047 R02047]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00562 R00562]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P29266 P29266]
 
−
** [http://www.uniprot.org/uniprot/P28811 P28811]
 
−
** [http://www.uniprot.org/uniprot/Q8XAE4 Q8XAE4]
 
−
** [http://www.uniprot.org/uniprot/Q55702 Q55702]
 
−
** [http://www.uniprot.org/uniprot/Q9XTI0 Q9XTI0]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-hydroxyisobutyrate dehydrogenase}}
+
{{#set: common-name=d-octopine dehydrogenase}}
−
{{#set: ec-number=ec-1.1.1.31}}
+
{{#set: ec-number=ec-1.5.1.11}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:02, 14 January 2021

Reaction 1.5.1.11-RXN

  • direction:
    • left-to-right
  • common-name:
    • d-octopine dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7351, pyruvate fermentation to opines:
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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