Difference between revisions of "RXN1F-150"

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(Created page with "Category:reaction == Reaction ACONITATEHYDR-RXN == * direction: ** reversible * common-name: ** cis-aconitate hydratase ** d-threo-isocitrate hydro-lyase (cis-aconitate-fo...")
(Created page with "Category:reaction == Reaction RXN1F-150 == * direction: ** left-to-right * common-name: ** lycopene β-cyclase * ec-number: ** [http://enzyme.expasy.org/EC/5.5.1.19 ec...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACONITATEHYDR-RXN ==
+
== Reaction RXN1F-150 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** cis-aconitate hydratase
+
** lycopene β-cyclase
−
** d-threo-isocitrate hydro-lyase (cis-aconitate-forming)
+
* ec-number:
 +
** [http://enzyme.expasy.org/EC/5.5.1.19 ec-5.5.1.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
+
* 1 [[CPD1F-114]][c] '''=>''' 1 [[CPD1F-126]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18471]]
+
* Gene: [[SJ04962]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ22396]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[orthology]]
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7591]], okenone biosynthesis:
−
* [[PWY-6549]], L-glutamine biosynthesis III:
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7938]], isorenieratene biosynthesis I (actinobacteria):
−
* [[PWY-5392]], reductive TCA cycle II:
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
** '''6''' reactions found over '''12''' reactions in the full pathway
+
* [[PWY-7939]], chlorobactene biosynthesis:
−
* [[PWY-5690]], TCA cycle II (plants and fungi):
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-5943]], &beta;-carotene biosynthesis:
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
** '''10''' reactions found over '''9''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic):
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase):
 
−
** '''10''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I:
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7124]], ethene biosynthesis V (engineered):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle:
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR115664
+
* METANETX-RXN : MNXR101031
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22147 22147]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32222 32222]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05341 R05341]
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=cis-aconitate hydratase|d-threo-isocitrate hydro-lyase (cis-aconitate-forming)}}
+
{{#set: common-name=lycopene &beta;-cyclase}}
−
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-5.5.1.19}}
−
{{#set: nb pathway associated=15}}
+
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction RXN1F-150

  • direction:
    • left-to-right
  • common-name:
    • lycopene β-cyclase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7591, okenone biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7938, isorenieratene biosynthesis I (actinobacteria):
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7939, chlorobactene biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5943, β-carotene biosynthesis:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR101031
  • RHEA:
  • LIGAND-RXN:





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