Difference between revisions of "RXN1F-165"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33682 tax-3...")
(Created page with "Category:reaction == Reaction 4.2.1.61-RXN == * direction: ** left-to-right * common-name: ** fatty acid synthase ** (3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydra...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537] ==
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== Reaction 4.2.1.61-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33682 tax-33682]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33154 tax-33154]
 
 
* common-name:
 
* common-name:
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** pyruvate fermentation to acetate v
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** fatty acid synthase
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== Reaction(s) found ==
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** (3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase
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* [[PYRUVDEH-RXN]]
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* ec-number:
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* [[SUCCCOASYN-RXN]]
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** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
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== Reaction(s) not found ==
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** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
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All reactions of this pathways are in present
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** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
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{{#set: taxonomic-range=tax-33682|tax-33154}}
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* synonymous:
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{{#set: common-name=pyruvate fermentation to acetate v}}
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** (3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
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{{#set: nb reaction found=2}}
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** β-hydroxypalmitoyl-acyl carrier protein dehydrase
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{{#set: completion rate=1.0}}
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** β-hydroxypalmitoyl thioester dehydratase
−
{{#set: nb total reaction=2}}
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** β-hydroxypalmityl-acp dehydrase
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** (3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)
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** d-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
 +
== Reaction formula ==
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* 1 [[R-3-Hydroxypalmitoyl-ACPs]][c] '''=>''' 1 [[2-Hexadecenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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== Gene(s) associated with this reaction  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[SJ04769]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ10275]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ15983]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ04443]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ06944]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ06617]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ13014]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ03883]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ18059]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ19629]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ00320]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ06616]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ11672]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ00613]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ10624]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ17743]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 +
== Pathway(s) ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== External links  ==
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R04462 R04462]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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** [http://www.uniprot.org/uniprot/P07149 P07149]
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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** [http://www.uniprot.org/uniprot/P12785 P12785]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=fatty acid synthase|(3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase}}
 +
{{#set: ec-number=ec-2.3.1.86|ec-2.3.1.85|ec-4.2.1.59}}
 +
{{#set: synonymous=&beta;-hydroxypalmityl-acp dehydrase|&beta;-hydroxypalmitoyl-acyl carrier protein dehydrase|d-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase|&beta;-hydroxypalmitoyl thioester dehydratase|(3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase|(3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)}}
 +
{{#set: nb gene associated=16}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 20:45, 18 December 2020

Reaction 4.2.1.61-RXN

  • direction:
    • left-to-right
  • common-name:
    • fatty acid synthase
    • (3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase
  • ec-number:
  • synonymous:
    • (3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
    • β-hydroxypalmitoyl-acyl carrier protein dehydrase
    • β-hydroxypalmitoyl thioester dehydratase
    • β-hydroxypalmityl-acp dehydrase
    • (3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)
    • d-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5971, palmitate biosynthesis II (bacteria and plant cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis (animals and fungi, cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "(3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

  • Property "Synonymous" (as page type) with input value "d-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "(3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "(3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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