Difference between revisions of "RXN1F-20"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROG-RXN HYDROG-RXN] == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1...")
(Created page with "Category:reaction == Reaction RXN1F-20 == * direction: ** left-to-right * common-name: ** magnesium chelatase * ec-number: ** [http://enzyme.expasy.org/EC/6.6.1.1 ec-6.6.1...")
 
(8 intermediate revisions by 4 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROG-RXN HYDROG-RXN] ==
+
== Reaction RXN1F-20 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** magnesium chelatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.12.7.2 ec-1.12.7.2]
+
** [http://enzyme.expasy.org/EC/6.6.1.1 ec-6.6.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HYDROGEN-MOLECULE]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''<=>''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[MG+2]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[MG-PROTOPORPHYRIN]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19006]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ19927]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12232]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ04494]]
+
* Gene: [[SJ16441]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ18864]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07205]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07204]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6785]], hydrogen production VIII: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6785 PWY-6785]
+
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6780]], hydrogen production VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6780 PWY-6780]
+
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6759]], hydrogen production III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6759 PWY-6759]
+
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
* [[GLUDEG-II-PWY]], L-glutamate degradation VII (to butanoate): [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-II-PWY GLUDEG-II-PWY]
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii): [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257]
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR101721
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17448 17448]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13962 13962]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00019 R00019]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03877 R03877]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P27648 P27648]
+
{{#set: common-name=magnesium chelatase}}
−
** [http://www.uniprot.org/uniprot/P31892 P31892]
+
{{#set: ec-number=ec-6.6.1.1}}
−
** [http://www.uniprot.org/uniprot/O25350 O25350]
+
{{#set: nb gene associated=5}}
−
** [http://www.uniprot.org/uniprot/O67092 O67092]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/P31891 P31891]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P0AAJ8 P0AAJ8]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/O66894 O66894]
 
−
** [http://www.uniprot.org/uniprot/P0AAM1 P0AAM1]
 
−
** [http://www.uniprot.org/uniprot/P31898 P31898]
 
−
** [http://www.uniprot.org/uniprot/P0ACE0 P0ACE0]
 
−
** [http://www.uniprot.org/uniprot/O28891 O28891]
 
−
** [http://www.uniprot.org/uniprot/O66895 O66895]
 
−
** [http://www.uniprot.org/uniprot/Q9ZLK4 Q9ZLK4]
 
−
** [http://www.uniprot.org/uniprot/Q9WY44 Q9WY44]
 
−
** [http://www.uniprot.org/uniprot/Q46508 Q46508]
 
−
** [http://www.uniprot.org/uniprot/O66896 O66896]
 
−
** [http://www.uniprot.org/uniprot/O67095 O67095]
 
−
** [http://www.uniprot.org/uniprot/Q9PN32 Q9PN32]
 
−
** [http://www.uniprot.org/uniprot/P13061 P13061]
 
−
** [http://www.uniprot.org/uniprot/Q9UYN3 Q9UYN3]
 
−
** [http://www.uniprot.org/uniprot/P16429 P16429]
 
−
** [http://www.uniprot.org/uniprot/O52683 O52683]
 
−
** [http://www.uniprot.org/uniprot/P13066 P13066]
 
−
** [http://www.uniprot.org/uniprot/O25349 O25349]
 
−
** [http://www.uniprot.org/uniprot/P0AAK1 P0AAK1]
 
−
** [http://www.uniprot.org/uniprot/P29166 P29166]
 
−
** [http://www.uniprot.org/uniprot/P07603 P07603]
 
−
** [http://www.uniprot.org/uniprot/P13628 P13628]
 
−
** [http://www.uniprot.org/uniprot/P0ACD8 P0ACD8]
 
−
** [http://www.uniprot.org/uniprot/P69739 P69739]
 
−
** [http://www.uniprot.org/uniprot/P12636 P12636]
 
−
** [http://www.uniprot.org/uniprot/P12635 P12635]
 
−
** [http://www.uniprot.org/uniprot/Q59262 Q59262]
 
−
** [http://www.uniprot.org/uniprot/P33375 P33375]
 
−
** [http://www.uniprot.org/uniprot/P33374 P33374]
 
−
** [http://www.uniprot.org/uniprot/P21950 P21950]
 
−
** [http://www.uniprot.org/uniprot/P21949 P21949]
 
−
** [http://www.uniprot.org/uniprot/P23000 P23000]
 
−
** [http://www.uniprot.org/uniprot/Q7M121 Q7M121]
 
−
** [http://www.uniprot.org/uniprot/P15283 P15283]
 
−
** [http://www.uniprot.org/uniprot/P15284 P15284]
 
−
** [http://www.uniprot.org/uniprot/P16430 P16430]
 
−
** [http://www.uniprot.org/uniprot/P16431 P16431]
 
−
** [http://www.uniprot.org/uniprot/P16432 P16432]
 
−
** [http://www.uniprot.org/uniprot/P16433 P16433]
 
−
** [http://www.uniprot.org/uniprot/P17633 P17633]
 
−
** [http://www.uniprot.org/uniprot/P17632 P17632]
 
−
** [http://www.uniprot.org/uniprot/P18191 P18191]
 
−
** [http://www.uniprot.org/uniprot/P18637 P18637]
 
−
** [http://www.uniprot.org/uniprot/P18636 P18636]
 
−
** [http://www.uniprot.org/uniprot/Q46606 Q46606]
 
−
** [http://www.uniprot.org/uniprot/P31875 P31875]
 
−
** [http://www.uniprot.org/uniprot/Q7M0Y1 Q7M0Y1]
 
−
** [http://www.uniprot.org/uniprot/Q7M0Y0 Q7M0Y0]
 
−
** [http://www.uniprot.org/uniprot/Q9S8S0 Q9S8S0]
 
−
** [http://www.uniprot.org/uniprot/P31883 P31883]
 
−
** [http://www.uniprot.org/uniprot/P21960 P21960]
 
−
** [http://www.uniprot.org/uniprot/Q43953 Q43953]
 
−
** [http://www.uniprot.org/uniprot/O96948 O96948]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: ec-number=ec-1.12.7.2}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=5}}
 
−
{{#set: reconstruction category=orthology}}
 
−
{{#set: reconstruction tool=pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN1F-20

  • direction:
    • left-to-right
  • common-name:
    • magnesium chelatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
    • 4 reactions found over 9 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR101721
  • RHEA:
  • LIGAND-RXN:





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