Difference between revisions of "RXN1F-462"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17918 RXN-17918] == * direction: ** left-to-right * common-name: ** dna ligase (atp) == Reactio...")
(Created page with "Category:reaction == Reaction RXN1F-462 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.91 ec-2.4.1.91] == Reaction formula == * 1 CP...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17918 RXN-17918] ==
+
== Reaction RXN1F-462 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
+
* ec-number:
−
** dna ligase (atp)
+
** [http://enzyme.expasy.org/EC/2.4.1.91 ec-2.4.1.91]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[DNA-Ligase-L-lysine-adenylate]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[A-5-prime-PP-5-prime-DNA]][c] '''+''' 1 [[DNA-Ligase-L-lysine]][c]
+
* 1 [[CPD-12575]][c] '''+''' 1 [[CPD-520]][c] '''=>''' 1 [[CPD1F-437]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19344]]
+
* Gene: [[SJ06217]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16080]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ15543]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13521]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7173]], quercetin triglucoside biosynthesis:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7172]], flavonol acylglucoside biosynthesis III - quercetin derivatives:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7137]], quercetin gentiotetraside biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7129]], quercetin glucoside biosynthesis (Allium):
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5390]], rutin biosynthesis:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5321]], quercetin glycoside biosynthesis (Arabidopsis):
 +
** '''1''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR143478
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02158 R02158]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dna ligase (atp)}}
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{{#set: ec-number=ec-2.4.1.91}}
−
{{#set: nb gene associated=4}}
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{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
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{{#set: nb pathway associated=6}}
−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN1F-462

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7173, quercetin triglucoside biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7172, flavonol acylglucoside biosynthesis III - quercetin derivatives:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7137, quercetin gentiotetraside biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7129, quercetin glucoside biosynthesis (Allium):
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-5390, rutin biosynthesis:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5321, quercetin glycoside biosynthesis (Arabidopsis):
    • 1 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR143478
  • LIGAND-RXN:





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