Difference between revisions of "RXN1F-72"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13139 RXN-13139] == * direction: ** reversible * common-name: ** atp-dependent nadph-hydrate de...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-SYNTHASE-FERREDOXIN-RXN GLUTAMATE-SYNTHASE-FERREDOXIN-RXN] == * direction: ** left-to-rig...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-SYNTHASE-FERREDOXIN-RXN GLUTAMATE-SYNTHASE-FERREDOXIN-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** glutamate synthase (ferredoxin) |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/4. | + | ** [http://enzyme.expasy.org/EC/1.4.7.1 ec-1.4.7.1] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLN]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 2 [[GLT]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ04922]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ04921]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ12700]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ13463]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ10812]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-4341]], L-glutamate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4341 PWY-4341] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-6964]], ammonia assimilation cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6964 PWY-6964] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12130 12130] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00021 R00021] |
− | * | + | * UNIPROT: |
− | ** [http://www. | + | ** [http://www.uniprot.org/uniprot/P23225 P23225] |
− | {{#set: direction= | + | ** [http://www.uniprot.org/uniprot/O67512 O67512] |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P96218 P96218] |
− | {{#set: ec-number=ec-4. | + | ** [http://www.uniprot.org/uniprot/Q06434 Q06434] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/Q43081 Q43081] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/P55037 P55037] |
− | {{#set: reconstruction category=annotation}} | + | ** [http://www.uniprot.org/uniprot/Q43155 Q43155] |
− | {{#set: reconstruction tool=pathwaytools}} | + | ** [http://www.uniprot.org/uniprot/Q7M242 Q7M242] |
+ | ** [http://www.uniprot.org/uniprot/P51375 P51375] | ||
+ | ** [http://www.uniprot.org/uniprot/P55038 P55038] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SLM4 Q9SLM4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q08258 Q08258] | ||
+ | ** [http://www.uniprot.org/uniprot/O49154 O49154] | ||
+ | ** [http://www.uniprot.org/uniprot/O19906 O19906] | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=glutamate synthase (ferredoxin)}} | ||
+ | {{#set: ec-number=ec-1.4.7.1}} | ||
+ | {{#set: nb gene associated=5}} | ||
+ | {{#set: nb pathway associated=3}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Revision as of 09:32, 27 August 2019
Contents
Reaction GLUTAMATE-SYNTHASE-FERREDOXIN-RXN
- direction:
- left-to-right
- common-name:
- glutamate synthase (ferredoxin)
- ec-number:
Reaction formula
- 1 2-KETOGLUTARATE[c] + 1 GLN[c] + 2 PROTON[c] + 2 Reduced-ferredoxins[c] => 2 GLT[c] + 2 Oxidized-ferredoxins[c]
Gene(s) associated with this reaction
- Gene: SJ04922
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ04921
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12700
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ13463
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ10812
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-6549, L-glutamine biosynthesis III: PWY-6549
- 8 reactions found over 9 reactions in the full pathway
- PWY-4341, L-glutamate biosynthesis V: PWY-4341
- 1 reactions found over 1 reactions in the full pathway
- PWY-6964, ammonia assimilation cycle II: PWY-6964
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: