Difference between revisions of "RXN1G-1084"

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(Created page with "Category:reaction == Reaction TransportSeed-CL- == * direction: ** left-to-right == Reaction formula == * 1.0 CL-[e] '''=>''' 1.0 CL-[c] == Gene(s) associated with...")
(Created page with "Category:reaction == Reaction RXN-12705 == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TransportSeed-CL- ==
+
== Reaction RXN-12705 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** 3-hydroxyacyl-coa dehydrogenase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CL-]][e] '''=>''' 1.0 [[CL-]][c]
+
* 1 [[CPD-13694]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD-13695]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ17348]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21390]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07211]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01444]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06127]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03584]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6946]], cholesterol degradation to androstenedione II (cholesterol dehydrogenase):
 +
** '''6''' reactions found over '''22''' reactions in the full pathway
 +
* [[PWY-6945]], cholesterol degradation to androstenedione I (cholesterol oxidase):
 +
** '''5''' reactions found over '''17''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR117707
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=3-hydroxyacyl-coa dehydrogenase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: ec-number=ec-1.1.1.35}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb gene associated=8}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:35, 15 March 2021

Reaction RXN-12705

  • direction:
    • left-to-right
  • common-name:
    • 3-hydroxyacyl-coa dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6946, cholesterol degradation to androstenedione II (cholesterol dehydrogenase):
    • 6 reactions found over 22 reactions in the full pathway
  • PWY-6945, cholesterol degradation to androstenedione I (cholesterol oxidase):
    • 5 reactions found over 17 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117707





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