Difference between revisions of "RXN1G-157"

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(Created page with "Category:reaction == Reaction RXN-15045 == * direction: ** left-to-right * common-name: ** glycerol-3-phosphate o-acyltransferase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction GLYCINE-N-METHYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** dimethylglycine n-methyltransferase * ec-number: ** [http:...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-15045 ==
+
== Reaction GLYCINE-N-METHYLTRANSFERASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glycerol-3-phosphate o-acyltransferase
+
** dimethylglycine n-methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.15 ec-2.3.1.15]
+
** [http://enzyme.expasy.org/EC/2.1.1.20 ec-2.1.1.20]
 +
* synonymous:
 +
** glycine sarcosine n-methyltransferase
 +
** s-adenosyl-l-methionine:sarcosine n-methyltransferase
 +
** gmt
 +
** glycine sarcosine dimethylglycine n-methyltransferase
 +
** gsdmt
 +
** gsmt
 +
** apgsmt
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLYCEROL-3P]][c] '''+''' 1 [[OLEOYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[L-1-LYSOPHOSPHATIDATE]][c]
+
* 1 [[GLY]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SARCOSINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18504]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ12116]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ11668]]
+
* Gene: [[SJ12128]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ12118]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12119]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18177]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03081]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02539]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10116]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02540]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14716]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11087]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7411]], phosphatidate biosynthesis (yeast):
+
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine):
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19938 19938]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00367 R00367]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P13255 P13255]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glycerol-3-phosphate o-acyltransferase}}
+
{{#set: common-name=dimethylglycine n-methyltransferase}}
−
{{#set: ec-number=ec-2.3.1.15}}
+
{{#set: ec-number=ec-2.1.1.20}}
−
{{#set: nb gene associated=2}}
+
{{#set: synonymous=gmt|gsdmt|apgsmt|s-adenosyl-l-methionine:sarcosine n-methyltransferase|glycine sarcosine dimethylglycine n-methyltransferase|glycine sarcosine n-methyltransferase|gsmt}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=11}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:25, 15 January 2021

Reaction GLYCINE-N-METHYLTRANSFERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • dimethylglycine n-methyltransferase
  • ec-number:
  • synonymous:
    • glycine sarcosine n-methyltransferase
    • s-adenosyl-l-methionine:sarcosine n-methyltransferase
    • gmt
    • glycine sarcosine dimethylglycine n-methyltransferase
    • gsdmt
    • gsmt
    • apgsmt

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P541-PWY, glycine betaine biosynthesis IV (from glycine):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6004, glycine betaine biosynthesis V (from glycine):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






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