Difference between revisions of "RXN21167"

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(Created page with "Category:reaction == Reaction DAHPSYN-RXN == * direction: ** reversible * common-name: ** 2-dehydro-3-deoxyphosphoheptonate aldolase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction RXN21167 == * direction: ** left-to-right == Reaction formula == * 1.0 CPD-22766[c] '''=>''' 1.0 CPD-12853[c] == Gene(s) associated w...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction DAHPSYN-RXN ==
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== Reaction RXN21167 ==
 
* direction:
 
* direction:
−
** reversible
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** left-to-right
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* common-name:
 
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** 2-dehydro-3-deoxyphosphoheptonate aldolase
 
−
* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.5.1.54 ec-2.5.1.54]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P]][c] '''+''' 1 [[Pi]][c]
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* 1.0 [[CPD-22766]][c] '''=>''' 1.0 [[CPD-12853]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04251]]
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* Gene: [[SJ05072]]
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** Category: [[annotation]]
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** Category: [[manual]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[reaction_creator_sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: curation sterols (girard et al.)
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-6164]], 3-dehydroquinate biosynthesis I:
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* [[PWY-8191]], cholesterol biosynthesis (algae, late side-chain reductase):
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** '''11''' reactions found over '''19''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[reaction_creator_sjap]]; tool: [[curation]]; comment: curation sterols (girard et al.)
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: direction=left-to-right}}
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14720 14720]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01826 R01826]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P0A1B5 P0A1B5]
 
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** [http://www.uniprot.org/uniprot/Q9JSQ8 Q9JSQ8]
 
−
** [http://www.uniprot.org/uniprot/P00887 P00887]
 
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** [http://www.uniprot.org/uniprot/P0AB91 P0AB91]
 
−
** [http://www.uniprot.org/uniprot/P00888 P00888]
 
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** [http://www.uniprot.org/uniprot/Q9PPJ1 Q9PPJ1]
 
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** [http://www.uniprot.org/uniprot/P46245 P46245]
 
−
** [http://www.uniprot.org/uniprot/P35170 P35170]
 
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** [http://www.uniprot.org/uniprot/P44303 P44303]
 
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** [http://www.uniprot.org/uniprot/P34725 P34725]
 
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** [http://www.uniprot.org/uniprot/P39912 P39912]
 
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** [http://www.uniprot.org/uniprot/P14843 P14843]
 
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** [http://www.uniprot.org/uniprot/Q02285 Q02285]
 
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** [http://www.uniprot.org/uniprot/P32449 P32449]
 
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** [http://www.uniprot.org/uniprot/P37215 P37215]
 
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** [http://www.uniprot.org/uniprot/P37216 P37216]
 
−
** [http://www.uniprot.org/uniprot/Q09755 Q09755]
 
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** [http://www.uniprot.org/uniprot/Q00218 Q00218]
 
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** [http://www.uniprot.org/uniprot/P29976 P29976]
 
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** [http://www.uniprot.org/uniprot/Q42921 Q42921]
 
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** [http://www.uniprot.org/uniprot/O22407 O22407]
 
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** [http://www.uniprot.org/uniprot/O52798 O52798]
 
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</div>
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=2-dehydro-3-deoxyphosphoheptonate aldolase}}
 
−
{{#set: ec-number=ec-2.5.1.54}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction comment=curation sterols (girard et al.)}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=reaction_creator_sjap}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN21167

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-8191, cholesterol biosynthesis (algae, late side-chain reductase):
    • 11 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN21167&oldid=141709"