|
|
| Line 1: |
Line 1: |
| − | [[Category:reaction]] | + | [[Category:pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GABATRANSAM-RXN GABATRANSAM-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6974 PWY-6974] == |
| − | * direction: | + | * taxonomic-range: |
| − | ** reversible | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] |
| | * common-name: | | * common-name: |
| − | ** 4-aminobutyrate transaminase | + | ** dtdp-l-olivose biosynthesis |
| − | * ec-number:
| + | == Reaction(s) found == |
| − | ** [http://enzyme.expasy.org/EC/2.6.1.19 ec-2.6.1.19]
| + | * [[DTDPGLUCDEHYDRAT-RXN]] |
| − | == Reaction formula == | + | == Reaction(s) not found == |
| − | * 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[SUCC-S-ALD]][c]
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12404 RXN-12404] |
| − | == Gene(s) associated with this reaction ==
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12928 RXN-12928] |
| − | * Gene: [[SJ07892]] | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12943 RXN-12943] |
| − | ** Category: [[annotation]]
| + | * [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCOSEPP-RXN DTDPGLUCOSEPP-RXN] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-16262 RXN-16262] |
| − | == Pathway(s) == | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12929 RXN-12929] |
| − | * [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY] | + | {{#set: taxonomic-range=tax-2}} |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| + | {{#set: common-name=dtdp-l-olivose biosynthesis}} |
| − | * [[PWY-6536]], 4-aminobutanoate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6536 PWY-6536] | + | {{#set: nb reaction found=1}} |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway | + | {{#set: completion rate=0.14}} |
| − | * [[PWY-6537]], 4-aminobutanoate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6537 PWY-6537]
| + | {{#set: nb total reaction=7}} |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
| |
| − | * [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022] | |
| − | ** '''3''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY-6535]], 4-aminobutanoate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6535 PWY-6535] | |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
| |
| − | * [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
| |
| − | ** '''3''' reactions found over '''5''' reactions in the full pathway | |
| − | * [[P181-PWY]], nicotine degradation I (pyridine pathway): [http://metacyc.org/META/NEW-IMAGE?object=P181-PWY P181-PWY]
| |
| − | ** '''2''' reactions found over '''17''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | == External links ==
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23355 23355]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01648 R01648]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P22256 P22256]
| |
| − | ** [http://www.uniprot.org/uniprot/P50457 P50457]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9UZ71 Q9UZ71]
| |
| − | ** [http://www.uniprot.org/uniprot/P50554 P50554]
| |
| − | ** [http://www.uniprot.org/uniprot/P80404 P80404]
| |
| − | ** [http://www.uniprot.org/uniprot/P14010 P14010]
| |
| − | ** [http://www.uniprot.org/uniprot/P17649 P17649]
| |
| − | ** [http://www.uniprot.org/uniprot/P40829 P40829]
| |
| − | ** [http://www.uniprot.org/uniprot/O13837 O13837]
| |
| − | {{#set: direction=reversible}} | |
| − | {{#set: common-name=4-aminobutyrate transaminase}} | |
| − | {{#set: ec-number=ec-2.6.1.19}}
| |
| − | {{#set: nb gene associated=1}} | |
| − | {{#set: nb pathway associated=7}} | |
| − | {{#set: reconstruction category=annotation}}
| |
| − | {{#set: reconstruction tool=pathwaytools}}
| |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | |
