Difference between revisions of "RXN3O-5293"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONDEHYDROG-RXN 6PGLUCONDEHYDROG-RXN] == * direction: ** left-to-right * common-name: ** phosp...")
 
(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-183963 tax-...")
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[[Category:reaction]]
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[[Category:pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONDEHYDROG-RXN 6PGLUCONDEHYDROG-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] ==
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* direction:
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* taxonomic-range:
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-183963 tax-183963]
 
* common-name:
 
* common-name:
−
** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
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** methylaspartate cycle
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** phosphogluconate dehydrogenase (decarboxylating)
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== Reaction(s) found ==
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* ec-number:
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* [[ACONITATEDEHYDR-RXN]]
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** [http://enzyme.expasy.org/EC/1.1.1.351 ec-1.1.1.351]
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* [[ACONITATEHYDR-RXN]]
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* synonymous:
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* [[CITSYN-RXN]]
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** 6-phosphogluconic dehydrogenase
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* [[FUMHYDR-RXN]]
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** 6pgd
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* [[GLUTAMATE-DEHYDROGENASE-RXN]]
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** 6-phosphogluconic carboxylase
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* [[ISOCITDEH-RXN]]
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** phosphogluconic acid dehydrogenase
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* [[MALATE-DEH-RXN]]
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== Reaction formula ==
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* [[PROPIONYL-COA-CARBOXY-RXN]]
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* 1 [[CPD-2961]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[RIBULOSE-5P]][c]
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* [[RXN-14937]]
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== Gene(s) associated with this reaction  ==
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* [[RXN-14971]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[SUCCCOASYN-RXN]]
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* Gene: [[SJ16180]]
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== Reaction(s) not found ==
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLASPARTATE-MUTASE-RXN METHYLASPARTATE-MUTASE-RXN]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12168 RXN-12168]
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* Gene: [[SJ15062]]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-MUT-RXN METHYLMALONYL-COA-MUT-RXN]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8960 RXN-8960]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8961 RXN-8961]
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* Gene: [[SJ11815]]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALYL-COA-LYASE-RXN MALYL-COA-LYASE-RXN]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-EPIM-RXN METHYLMALONYL-COA-EPIM-RXN]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLASPARTATE-AMMONIA-LYASE-RXN METHYLASPARTATE-AMMONIA-LYASE-RXN]
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* Gene: [[SJ14331]]
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{{#set: taxonomic-range=tax-183963}}
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** Category: [[annotation]]
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{{#set: common-name=methylaspartate cycle}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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{{#set: nb reaction found=11}}
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* Gene: [[SJ07211]]
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{{#set: completion rate=0.58}}
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** Category: [[annotation]]
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{{#set: nb total reaction=19}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ06127]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ11912]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ12698]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ22264]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ12699]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ00878]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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</div>
 
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== Pathway(s) ==
 
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
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** '''16''' reactions found over '''18''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10117 10117]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P14332 P14332]
 
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** [http://www.uniprot.org/uniprot/P31072 P31072]
 
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** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4]
 
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** [http://www.uniprot.org/uniprot/P47506 P47506]
 
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** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3]
 
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** [http://www.uniprot.org/uniprot/P43774 P43774]
 
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** [http://www.uniprot.org/uniprot/P12013 P12013]
 
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** [http://www.uniprot.org/uniprot/P41576 P41576]
 
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** [http://www.uniprot.org/uniprot/P00350 P00350]
 
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** [http://www.uniprot.org/uniprot/P00349 P00349]
 
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** [http://www.uniprot.org/uniprot/P52209 P52209]
 
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** [http://www.uniprot.org/uniprot/P41581 P41581]
 
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** [http://www.uniprot.org/uniprot/P41582 P41582]
 
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** [http://www.uniprot.org/uniprot/Q59275 Q59275]
 
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** [http://www.uniprot.org/uniprot/P41583 P41583]
 
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** [http://www.uniprot.org/uniprot/Q60254 Q60254]
 
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** [http://www.uniprot.org/uniprot/P37754 P37754]
 
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** [http://www.uniprot.org/uniprot/Q59410 Q59410]
 
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** [http://www.uniprot.org/uniprot/P52207 P52207]
 
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** [http://www.uniprot.org/uniprot/P70718 P70718]
 
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** [http://www.uniprot.org/uniprot/Q7M451 Q7M451]
 
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** [http://www.uniprot.org/uniprot/P41572 P41572]
 
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** [http://www.uniprot.org/uniprot/P14062 P14062]
 
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** [http://www.uniprot.org/uniprot/P21577 P21577]
 
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** [http://www.uniprot.org/uniprot/P38720 P38720]
 
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** [http://www.uniprot.org/uniprot/Q40311 Q40311]
 
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** [http://www.uniprot.org/uniprot/P53319 P53319]
 
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** [http://www.uniprot.org/uniprot/O81237 O81237]
 
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** [http://www.uniprot.org/uniprot/O81238 O81238]
 
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** [http://www.uniprot.org/uniprot/O81239 O81239]
 
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** [http://www.uniprot.org/uniprot/O22111 O22111]
 
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** [http://www.uniprot.org/uniprot/Q17761 Q17761]
 
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** [http://www.uniprot.org/uniprot/O32911 O32911]
 
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</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]|phosphogluconate dehydrogenase (decarboxylating)}}
 
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{{#set: ec-number=ec-1.1.1.351}}
 
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{{#set: synonymous=6-phosphogluconic dehydrogenase|6pgd|6-phosphogluconic carboxylase|phosphogluconic acid dehydrogenase}}
 
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{{#set: nb gene associated=11}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Revision as of 14:29, 26 August 2019

Pathway PWY-6728

  • taxonomic-range:
  • common-name:
    • methylaspartate cycle

Reaction(s) found

Reaction(s) not found



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