Difference between revisions of "RXN490-3641"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-NAD+-RXN DNA-LIGASE-NAD+-RXN] == * direction: ** left-to-right * common-name: ** dna lig...")
 
(Created page with "Category:reaction == Reaction RXN490-3641 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.57 ec-1.14.11.57] * synonymous: ** proline...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-NAD+-RXN DNA-LIGASE-NAD+-RXN] ==
+
== Reaction RXN490-3641 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** dna ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
+
** [http://enzyme.expasy.org/EC/1.14.11.57 ec-1.14.11.57]
−
** [http://enzyme.expasy.org/EC/6.5.1.2 ec-6.5.1.2]
+
* synonymous:
 +
** proline hydroxylase
 +
** protocollagen hydroxylase
 +
** prolyl 4-hydroxylase
 +
** proline,2-oxoglutarate 4-dioxygenase
 +
** prolyl hydroxylase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[4-HYDROXY-L-PROLINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ15543]]
+
* Gene: [[SJ10762]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19344]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
+
* Gene: [[SJ20526]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20511]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR103186
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=51509 51509]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00382 R00382]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01252 R01252]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P47496 P47496]
 
−
** [http://www.uniprot.org/uniprot/Q9PHT0 Q9PHT0]
 
−
** [http://www.uniprot.org/uniprot/Q9CIE4 Q9CIE4]
 
−
** [http://www.uniprot.org/uniprot/P43813 P43813]
 
−
** [http://www.uniprot.org/uniprot/O31498 O31498]
 
−
** [http://www.uniprot.org/uniprot/O25336 O25336]
 
−
** [http://www.uniprot.org/uniprot/O51502 O51502]
 
−
** [http://www.uniprot.org/uniprot/P15042 P15042]
 
−
** [http://www.uniprot.org/uniprot/P28719 P28719]
 
−
** [http://www.uniprot.org/uniprot/P49422 P49422]
 
−
** [http://www.uniprot.org/uniprot/P78021 P78021]
 
−
** [http://www.uniprot.org/uniprot/P72588 P72588]
 
−
** [http://www.uniprot.org/uniprot/Q49078 Q49078]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dna ligase}}
+
{{#set: ec-number=ec-1.14.11.57}}
−
{{#set: ec-number=ec-6.5.1.2|ec-6.5.1.6}}
+
{{#set: synonymous=proline hydroxylase|protocollagen hydroxylase|prolyl 4-hydroxylase|proline,2-oxoglutarate 4-dioxygenase|prolyl hydroxylase}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN490-3641

  • direction:
    • left-to-right
  • ec-number:
  • synonymous:
    • proline hydroxylase
    • protocollagen hydroxylase
    • prolyl 4-hydroxylase
    • proline,2-oxoglutarate 4-dioxygenase
    • prolyl hydroxylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR103186
  • RHEA:
  • LIGAND-RXN:





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