Difference between revisions of "RXN66-12"
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(Created page with "Category:reaction == Reaction NODOx == * direction: ** left-to-right * common-name: ** nitric oxide, nadh2:oxygen oxidoreductase == Reaction formula == * 1.0 NADH[c] '...") |
(Created page with "Category:reaction == Reaction PHOSPHAGLYPSYN-RXN == * direction: ** left-to-right * common-name: ** cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase * ec-...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction PHOSPHAGLYPSYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.7.8.5 ec-2.7.8.5] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[CDPDIACYLGLYCEROL]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ08733]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-5269]], cardiolipin biosynthesis II: | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY0-1545]], cardiolipin biosynthesis III: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-5668]], cardiolipin biosynthesis I: | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic): | ||
+ | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic): | ||
+ | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): | ||
+ | ** '''6''' reactions found over '''16''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12593 12593] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01801 R01801] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTH1 Q9JTH1] | ||
+ | ** [http://www.uniprot.org/uniprot/P46322 P46322] | ||
+ | ** [http://www.uniprot.org/uniprot/P44528 P44528] | ||
+ | ** [http://www.uniprot.org/uniprot/P47360 P47360] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNM7 Q9PNM7] | ||
+ | ** [http://www.uniprot.org/uniprot/O25660 O25660] | ||
+ | ** [http://www.uniprot.org/uniprot/O51663 O51663] | ||
+ | ** [http://www.uniprot.org/uniprot/O67908 O67908] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49839 Q49839] | ||
+ | ** [http://www.uniprot.org/uniprot/P75520 P75520] | ||
+ | ** [http://www.uniprot.org/uniprot/P74372 P74372] | ||
+ | ** [http://www.uniprot.org/uniprot/Q48959 Q48959] | ||
+ | ** [http://www.uniprot.org/uniprot/P0ABF8 P0ABF8] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase}} |
+ | {{#set: ec-number=ec-2.7.8.5}} | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:35, 5 January 2021
Contents
Reaction PHOSPHAGLYPSYN-RXN
- direction:
- left-to-right
- common-name:
- cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
- ec-number:
Reaction formula
- 1 CDPDIACYLGLYCEROL[c] + 1 GLYCEROL-3P[c] => 1 CMP[c] + 1 L-1-PHOSPHATIDYL-GLYCEROL-P[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ08733
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5269, cardiolipin biosynthesis II:
- 3 reactions found over 3 reactions in the full pathway
- PWY0-1545, cardiolipin biosynthesis III:
- 2 reactions found over 3 reactions in the full pathway
- PWY-5668, cardiolipin biosynthesis I:
- 3 reactions found over 3 reactions in the full pathway
- PWY4FS-8, phosphatidylglycerol biosynthesis II (non-plastidic):
- 3 reactions found over 2 reactions in the full pathway
- PWY4FS-7, phosphatidylglycerol biosynthesis I (plastidic):
- 3 reactions found over 2 reactions in the full pathway
- PWY-7817, type I lipoteichoic acid biosynthesis (S. aureus):
- 6 reactions found over 16 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: