Difference between revisions of "RXN66-350"

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(Created page with "Category:reaction == Reaction SERINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** l-serine:trnaser ligase (amp-forming) * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction RXN66-350 == * direction: ** reversible * common-name: ** 3-beta-hydroxy-delta5-steroid dehydrogenase * ec-number: ** [http://enzyme.expasy.o...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SERINE--TRNA-LIGASE-RXN ==
+
== Reaction RXN66-350 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** l-serine:trnaser ligase (amp-forming)
+
** 3-beta-hydroxy-delta5-steroid dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11]
+
** [http://enzyme.expasy.org/EC/1.1.1.145 ec-1.1.1.145]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[SER-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD66-23]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CPD66-27]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14143]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ04385]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03340]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08509]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19806]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ21834]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07311]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ21018]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10400]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06332]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02713]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19982]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10476]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03341]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01092]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04782]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21972]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21137]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17700]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16241]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR123730
−
* RHEA:
+
{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12293 12293]
+
{{#set: common-name=3-beta-hydroxy-delta5-steroid dehydrogenase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-1.1.1.145}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
+
{{#set: nb gene associated=19}}
−
* UNIPROT:
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/O51244 O51244]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/O66647 O66647]
 
−
** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
 
−
** [http://www.uniprot.org/uniprot/Q58477 Q58477]
 
−
** [http://www.uniprot.org/uniprot/O27194 O27194]
 
−
** [http://www.uniprot.org/uniprot/O84734 O84734]
 
−
** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
 
−
** [http://www.uniprot.org/uniprot/P47251 P47251]
 
−
** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
 
−
** [http://www.uniprot.org/uniprot/O83653 O83653]
 
−
** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
 
−
** [http://www.uniprot.org/uniprot/P49591 P49591]
 
−
** [http://www.uniprot.org/uniprot/P56458 P56458]
 
−
** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
 
−
** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
 
−
** [http://www.uniprot.org/uniprot/P43833 P43833]
 
−
** [http://www.uniprot.org/uniprot/P26636 P26636]
 
−
** [http://www.uniprot.org/uniprot/P39919 P39919]
 
−
** [http://www.uniprot.org/uniprot/P37464 P37464]
 
−
** [http://www.uniprot.org/uniprot/Q39230 Q39230]
 
−
** [http://www.uniprot.org/uniprot/P75107 P75107]
 
−
** [http://www.uniprot.org/uniprot/P73201 P73201]
 
−
** [http://www.uniprot.org/uniprot/O82108 O82108]
 
−
** [http://www.uniprot.org/uniprot/O82110 O82110]
 
−
** [http://www.uniprot.org/uniprot/O81983 O81983]
 
−
** [http://www.uniprot.org/uniprot/O45887 O45887]
 
−
** [http://www.uniprot.org/uniprot/O14018 O14018]
 
−
** [http://www.uniprot.org/uniprot/P54221 P54221]
 
−
** [http://www.uniprot.org/uniprot/P07284 P07284]
 
−
** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=l-serine:trnaser ligase (amp-forming)}}
 
−
{{#set: ec-number=ec-6.1.1.11}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN66-350

  • direction:
    • reversible
  • common-name:
    • 3-beta-hydroxy-delta5-steroid dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR123730





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