Difference between revisions of "RXN66-353"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DLACTDEHYDROGNAD-RXN DLACTDEHYDROGNAD-RXN] == * direction: ** left-to-right * common-name: ** d-lac...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.22.4-RXN 3.1.22.4-RXN] == * direction: ** left-to-right * common-name: ** crossover junction en...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DLACTDEHYDROGNAD-RXN DLACTDEHYDROGNAD-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.22.4-RXN 3.1.22.4-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** d-lactate dehydrogenase
+
** crossover junction endodeoxyribonuclease
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.28 ec-1.1.1.28]
+
** [http://enzyme.expasy.org/EC/3.1.22.4 ec-3.1.22.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[D-LACTATE]][c] '''+''' 1 [[NAD]][c]
+
* 1 [[DNA-Combined-With-Exogenous-DNA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Resolution-of-Recombinational-Junction]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21294]]
+
* Gene: [[SJ15185]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ20245]]
+
* Gene: [[SJ18163]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii): [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257]
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6454]], vancomycin resistance I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6454 PWY-6454]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate): [http://metacyc.org/META/NEW-IMAGE?object=ALACAT2-PWY ALACAT2-PWY]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16371 16371]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00704 R00704]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P26297 P26297]
+
** [http://www.uniprot.org/uniprot/P0A814 P0A814]
−
** [http://www.uniprot.org/uniprot/P26298 P26298]
+
** [http://www.uniprot.org/uniprot/P44633 P44633]
−
** [http://www.uniprot.org/uniprot/Q7M4J0 Q7M4J0]
+
** [http://www.uniprot.org/uniprot/O83530 O83530]
−
** [http://www.uniprot.org/uniprot/Q9R553 Q9R553]
+
** [http://www.uniprot.org/uniprot/O84510 O84510]
−
** [http://www.uniprot.org/uniprot/P06149 P06149]
+
** [http://www.uniprot.org/uniprot/O25544 O25544]
−
** [http://www.uniprot.org/uniprot/Q9JT76 Q9JT76]
+
** [http://www.uniprot.org/uniprot/Q9PLU8 Q9PLU8]
−
** [http://www.uniprot.org/uniprot/Q9JUP8 Q9JUP8]
+
** [http://www.uniprot.org/uniprot/Q51424 Q51424]
−
** [http://www.uniprot.org/uniprot/P52643 P52643]
+
** [http://www.uniprot.org/uniprot/Q37873 Q37873]
−
** [http://www.uniprot.org/uniprot/P45295 P45295]
+
** [http://www.uniprot.org/uniprot/P0AG74 P0AG74]
−
** [http://www.uniprot.org/uniprot/P30901 P30901]
+
** [http://www.uniprot.org/uniprot/Q55506 Q55506]
−
** [http://www.uniprot.org/uniprot/Q89388 Q89388]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=d-lactate dehydrogenase}}
+
{{#set: common-name=crossover junction endodeoxyribonuclease}}
−
{{#set: ec-number=ec-1.1.1.28}}
+
{{#set: ec-number=ec-3.1.22.4}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction 3.1.22.4-RXN

  • direction:
    • left-to-right
  • common-name:
    • crossover junction endodeoxyribonuclease
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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