Difference between revisions of "RXN66-469"

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(Created page with "Category:reaction == Reaction 1-PHOSPHATIDYLINOSITOL-3-KINASE-RXN == * direction: ** left-to-right * common-name: ** phosphatidylinositol 3-kinase ** 1-phosphatidylinosito...")
(Created page with "Category:reaction == Reaction RXN66-469 == * direction: ** left-to-right * common-name: ** 3-methyl-branched fatty acyl-coa ligase ** 3-methyl-branched 2,3,4-saturated fat...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1-PHOSPHATIDYLINOSITOL-3-KINASE-RXN ==
+
== Reaction RXN66-469 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphatidylinositol 3-kinase
+
** 3-methyl-branched fatty acyl-coa ligase
−
** 1-phosphatidylinositol-3-kinase
+
** 3-methyl-branched 2,3,4-saturated fatty acyl-coa ligase
 +
** long-chain fatty acid-coa ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.137 ec-2.7.1.137]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[L-1-phosphatidyl-inositols]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-177]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[3-Methyl-Saturated-Fatty-Acids]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[3-Methyl-Saturated-Fatty-Acyl-CoA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10785]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ08691]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13972]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02006]]
+
* Gene: [[SJ08690]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ17148]]
+
* Gene: [[SJ03650]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12193]]
+
* Gene: [[SJ08692]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6352]], 3-phosphoinositide biosynthesis:
+
* [[PWY66-387]], 3-methyl-branched fatty acid &alpha;-oxidation:
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR123740
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12710 12710]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03362 R03362]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P22543 P22543]
 
−
** [http://www.uniprot.org/uniprot/Q13315 Q13315]
 
−
** [http://www.uniprot.org/uniprot/P32871 P32871]
 
−
** [http://www.uniprot.org/uniprot/P42338 P42338]
 
−
** [http://www.uniprot.org/uniprot/P42336 P42336]
 
−
** [http://www.uniprot.org/uniprot/P32600 P32600]
 
−
** [http://www.uniprot.org/uniprot/P35169 P35169]
 
−
** [http://www.uniprot.org/uniprot/O04269 O04269]
 
−
** [http://www.uniprot.org/uniprot/P91634 P91634]
 
−
** [http://www.uniprot.org/uniprot/Q92213 Q92213]
 
−
** [http://www.uniprot.org/uniprot/P54673 P54673]
 
−
** [http://www.uniprot.org/uniprot/P54674 P54674]
 
−
** [http://www.uniprot.org/uniprot/P54675 P54675]
 
−
** [http://www.uniprot.org/uniprot/P54677 P54677]
 
−
** [http://www.uniprot.org/uniprot/O35904 O35904]
 
−
** [http://www.uniprot.org/uniprot/P50520 P50520]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=1-phosphatidylinositol-3-kinase|phosphatidylinositol 3-kinase}}
+
{{#set: common-name=3-methyl-branched 2,3,4-saturated fatty acyl-coa ligase|3-methyl-branched fatty acyl-coa ligase|long-chain fatty acid-coa ligase}}
−
{{#set: ec-number=ec-2.7.1.137}}
+
{{#set: ec-number=ec-6.2.1.3}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=6}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN66-469

  • direction:
    • left-to-right
  • common-name:
    • 3-methyl-branched fatty acyl-coa ligase
    • 3-methyl-branched 2,3,4-saturated fatty acyl-coa ligase
    • long-chain fatty acid-coa ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-387, 3-methyl-branched fatty acid α-oxidation:
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123740





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