Difference between revisions of "RXN66-470"

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(Created page with "Category:reaction == Reaction OHACYL-COA-DEHYDROG-RXN == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydrogenase * ec-number: ** [http://enzyme.exp...")
(Created page with "Category:reaction == Reaction RXN66-470 == * direction: ** left-to-right * common-name: ** 3-methyl-branched fatty acyl-coa 2-hydroxylase * ec-number: ** [http://enzyme.ex...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction OHACYL-COA-DEHYDROG-RXN ==
+
== Reaction RXN66-470 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-hydroxyacyl-coa dehydrogenase
+
** 3-methyl-branched fatty acyl-coa 2-hydroxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
+
** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-3-HYDROXYACYL-COA]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[3-Methyl-Saturated-Fatty-Acyl-CoA]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[2-OH-3-Methyl-Saturated-Fatty-Acyl-CoA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ14991]]
−
* Gene: [[SJ17348]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* Gene: [[SJ02013]]
−
* Gene: [[SJ03584]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[SJ10365]]
−
* Gene: [[SJ01444]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21390]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06127]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5136]], fatty acid &beta;-oxidation II (plant peroxisome):
+
* [[PWY66-387]], 3-methyl-branched fatty acid &alpha;-oxidation:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY66-391]], fatty acid &beta;-oxidation VI (mammalian peroxisome):
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7007]], methyl ketone biosynthesis (engineered):
 
 
** '''4''' reactions found over '''6''' reactions in the full pathway
 
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR123741
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22433 22433]
 
−
* PIR:
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49613 A49613]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55045 A55045]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPGC DEPGC]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DWRTEP DWRTEP]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4210 JC4210]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4879 JC4879]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0199 JX0199]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S32607 S32607]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36678 S36678]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40743 S40743]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S54786 S54786]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57651 S57651]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74114 S74114]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46866 T46866]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P21177 P21177]
 
−
** [http://www.uniprot.org/uniprot/Q08426 Q08426]
 
−
** [http://www.uniprot.org/uniprot/Q53924 Q53924]
 
−
** [http://www.uniprot.org/uniprot/P07896 P07896]
 
−
** [http://www.uniprot.org/uniprot/Q61425 Q61425]
 
−
** [http://www.uniprot.org/uniprot/Q16836 Q16836]
 
−
** [http://www.uniprot.org/uniprot/P28793 P28793]
 
−
** [http://www.uniprot.org/uniprot/P22414 P22414]
 
−
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
 
−
** [http://www.uniprot.org/uniprot/P34439 P34439]
 
−
** [http://www.uniprot.org/uniprot/Q01373 Q01373]
 
−
** [http://www.uniprot.org/uniprot/P55100 P55100]
 
−
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 
−
** [http://www.uniprot.org/uniprot/P00348 P00348]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01778 R01778]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-hydroxyacyl-coa dehydrogenase}}
+
{{#set: common-name=3-methyl-branched fatty acyl-coa 2-hydroxylase}}
−
{{#set: ec-number=ec-1.1.1.35}}
+
{{#set: ec-number=ec-1.14.11}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN66-470

  • direction:
    • left-to-right
  • common-name:
    • 3-methyl-branched fatty acyl-coa 2-hydroxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-387, 3-methyl-branched fatty acid α-oxidation:
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123741





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