Difference between revisions of "RXN66-470"

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(Created page with "Category:reaction == Reaction PYRNUTRANSHYDROGEN-RXN == * direction: ** left-to-right * common-name: ** nad(p)+ transhydrogenase (ab-specific) ** pyridine nucleotide trans...")
(Created page with "Category:reaction == Reaction AMCL == * direction: ** left-to-right * common-name: ** s-adenosyl-l-methionine carboxy-lyase == Reaction formula == * 1.0 PROTON[c] '''+...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRNUTRANSHYDROGEN-RXN ==
+
== Reaction AMCL ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** nad(p)+ transhydrogenase (ab-specific)
+
** s-adenosyl-l-methionine carboxy-lyase
−
** pyridine nucleotide transhydrogenase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.6.1.2 ec-1.6.1.2]
 
−
** [http://enzyme.expasy.org/EC/1.6.1.3 ec-1.6.1.3]
 
−
** [http://enzyme.expasy.org/EC/1.6.1.1 ec-1.6.1.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NAD]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[NADP]][c]
+
* 1.0 [[PROTON]][c] '''+''' 1.0 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1.0 [[CARBON-DIOXIDE]][c] '''+''' 1.0 [[S-ADENOSYLMETHIONINAMINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ07458]]
−
* Gene: [[SJ20208]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03777]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03718]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ20207]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20209]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03778]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13593]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10661]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08849]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5083]], NAD/NADH phosphorylation and dephosphorylation:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11692 11692]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00112 R00112]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9JUR5 Q9JUR5]
 
−
** [http://www.uniprot.org/uniprot/Q9JUR3 Q9JUR3]
 
−
** [http://www.uniprot.org/uniprot/P11024 P11024]
 
−
** [http://www.uniprot.org/uniprot/P07001 P07001]
 
−
** [http://www.uniprot.org/uniprot/P0AB67 P0AB67]
 
−
** [http://www.uniprot.org/uniprot/P43842 P43842]
 
−
** [http://www.uniprot.org/uniprot/P43010 P43010]
 
−
** [http://www.uniprot.org/uniprot/Q61941 Q61941]
 
−
** [http://www.uniprot.org/uniprot/P73500 P73500]
 
−
** [http://www.uniprot.org/uniprot/P73496 P73496]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=pyridine nucleotide transhydrogenase|nad(p)+ transhydrogenase (ab-specific)}}
+
{{#set: common-name=s-adenosyl-l-methionine carboxy-lyase}}
−
{{#set: ec-number=ec-1.6.1.3|ec-1.6.1.1|ec-1.6.1.2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 15:03, 5 January 2021

Reaction AMCL

  • direction:
    • left-to-right
  • common-name:
    • s-adenosyl-l-methionine carboxy-lyase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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