Difference between revisions of "RXN66-472"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FATTY-ACID-PEROXIDASE-RXN FATTY-ACID-PEROXIDASE-RXN] == * direction: ** left-to-right * ec-number:...")
(Created page with "Category:reaction == Reaction AGMATIN-RXN == * direction: ** left-to-right * common-name: ** agmatinase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.3.11 ec-3.5.3.11]...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FATTY-ACID-PEROXIDASE-RXN FATTY-ACID-PEROXIDASE-RXN] ==
+
== Reaction AGMATIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** agmatinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.11.1.3 ec-1.11.1.3]
+
** [http://enzyme.expasy.org/EC/3.5.3.11 ec-3.5.3.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PALMITATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-388]][c] '''+''' 3 [[WATER]][c]
+
* 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ00773]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6305]], superpathway of putrescine biosynthesis:
 +
** '''4''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-40]], putrescine biosynthesis I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23960 23960]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01703 R01703]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P60654 P60654]
 +
** [http://www.uniprot.org/uniprot/P60653 P60653]
 +
** [http://www.uniprot.org/uniprot/P60651 P60651]
 +
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
 +
** [http://www.uniprot.org/uniprot/P73270 P73270]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.11.1.3}}
+
{{#set: common-name=agmatinase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-3.5.3.11}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:38, 18 December 2020

Reaction AGMATIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • agmatinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6305, superpathway of putrescine biosynthesis:
    • 4 reactions found over n.a reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-40, putrescine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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